Ectothiorhodospira sp. BSL-9: ECTOBSL9_2304
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Entry
ECTOBSL9_2304 CDS
T04374
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ebs
Ectothiorhodospira sp. BSL-9
Pathway
ebs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECTOBSL9_2304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebs03019
]
ECTOBSL9_2304
03009 Ribosome biogenesis [BR:
ebs03009
]
ECTOBSL9_2304
Enzymes [BR:
ebs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ECTOBSL9_2304
Messenger RNA biogenesis [BR:
ebs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECTOBSL9_2304
Ribosome biogenesis [BR:
ebs03009
]
Prokaryotic type
rRNA processing factors
ECTOBSL9_2304
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANB03852
LinkDB
All DBs
Position
complement(2466770..2469766)
Genome browser
AA seq
998 aa
AA seq
DB search
MKRILVNATQPEELRVAMVDGQKLFDLDIELPSREQKKANVYKGVITRVEPSLEAAFINY
GADRHGFLPFKEIARSYLAQGEDGDASPKTGLKEGMELIVQVEKEERGTKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGEERSEIRESLAQLEVPQGMGLIARTAGVGRSVEELQW
DLEYLKTLWTSIDEAAQSNKGPFLIYQESNVIIRTLRDHMRNDIAEIVVDDPKVFSQAQD
FMQQVMPNNLRKLKLYEDHVPLFNRYQIESQIEAAFQRDVTLPSGGAIVIDHTEALISID
VNSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMAPNKNQREVENRL
RSALEMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQNVCPRCNGHGHIRSVESLSLSV
LRLVEEEAMKEKTHRVLAHLPVDVSTFLLNEKRQVISTIESRYHVDITLVPSPNLLTPHF
TVRRMRDDETADEIGDKSSYQLLTEEEPELVNQPRAARLEKALVQTISPSTPAPTAAPAP
AETAPEQRKPVSPVSLPGLFNRIWTSLFSNGGQRPESRSVDGDSGTSRPPQRTSSSGQGT
RSGGAQRPARTRNVAPGGPQRRERSQADKDKESGNGTRGNRTRRGGGRTRRGGRDGNENL
SEDKNQNRNTQPNAAEETPQAKPTETGKGPQASDTKGSQEGQKEETRGREKDADTAKVQP
ETGSNEVDAAQADTSTGEATGQQGNGQPQEQEGSSGGGRSGSGRSRGRRGGRRRRRSSTG
NTEGRQDDNDRNPQGEGEGESDDASSSAERAPRKQASDKRERTEEPQDKPAEDKTQTKAP
DEAPANDQAQKSPAKAKTGTEDTQELAKLTHEESVPHSRALQKQDEDAGSKRKADTADAA
TSTSSEADSGEKAATDAPDGQEKSGPSRRTRGGRRSSGRSERSEESQGSGSSERRVSREE
MEKLQAVAKQATSSPDESREQPDQPSTEEASDSKKSGQ
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaattcttgtcaatgccacgcagcccgaagagctgcgtgtggccatggtggac
ggccagaaactcttcgatctcgacatcgaactcccctcccgggaacagaaaaaggcgaac
gtctacaaaggggtcatcacccgggttgagcccagccttgaggccgccttcatcaattac
ggcgccgatcgccacgggttcctgcccttcaaggagattgcccgcagctacctggctcaa
ggtgaagacggcgatgcctcacccaagaccggcctcaaggagggcatggaactcatcgtt
caggtggagaaggaagagcgaggcaccaagggtgcagctctgaccaccttcgtcagcctg
gccggacgctatctggtcctgatgcccaacaacccccgtgccggaggcgtctcccgccgt
atcgagggcgaggagcgcagcgagatccgcgaatccctggcgcaactggaagtcccccag
ggcatgggcctcattgcccgcacggccggggtgggccgcagcgtcgaagaactccagtgg
gatctggaatacctcaagaccctctggacctccatcgatgaagccgcccagagcaacaag
ggacccttcctgatctaccaggaaagcaacgtgatcatccgcaccctgcgggatcacatg
cgcaacgacatcgccgagatcgtcgtcgacgaccccaaggtcttctcccaggcacaggac
ttcatgcagcaggtgatgcccaacaacctgcgcaagctcaagctgtacgaagaccatgtg
ccgctcttcaaccggtatcagatcgaaagccagatcgaggcggcattccagcgcgatgtc
accctgccctccggcggtgccatcgtcatcgatcacacggaagccctgatctccatcgac
gtgaactctgcccgcgccaccaagggcagcgacatcgaagagaccgccctgaacaccaac
ctggaggccgccgatgaaatcgcccggcaactgcgcctgagggatctgggcggcctgatc
gtcatcgacttcatcgacatggcccccaacaagaaccagcgggaagtggaaaaccggttg
cgctcggccctggagatggatcgtgcacgggtgcaggtggggcggatttcccgctttggc
ctgctggagatgtcccgccagcgcctgcggccttccctgggtgaatccagtcagaatgtc
tgcccccgctgcaacggccacggccatatccgcagcgtggaatccctctccctgtcggtg
ctgcgactggtggaggaagaggccatgaaggaaaagacccaccgggtactcgcgcacctg
cccgtggatgtatccaccttcctgctcaacgaaaagcgccaggtgatctccaccatcgag
tcgcgctatcacgtggacatcaccctcgttcccagccccaacctgcttacgccccatttc
accgtgcgccgcatgcgggatgacgagaccgccgacgagatcggcgacaagagcagttat
caactgctcaccgaagaggagccggaactggtcaaccagccgcgggcggcgcgcctggaa
aaggccctggtacagacgatctcaccgtccacgccggctccgaccgcagcaccggcaccg
gccgaaacggcacccgagcagagaaaacccgtctctcccgtgtcactccccgggcttttc
aaccgcatctggaccagcctgttctccaatggcgggcaaagacccgagtcccgcagcgtc
gatggcgacagcggtacctcccgtcctccccagcgcacctcgtcatccgggcagggcacc
cgcagtggcggtgctcaacggcccgcgcgcacccgcaacgtggcccccggcggcccacag
cgccgcgagcgttcgcaagcagacaaggacaaggagagtggcaacggcactcgcggtaac
cgcacacgacgcggcggtggtcgtacgcgacggggtggacgcgacggcaacgagaacctg
agcgaggacaagaaccagaaccgcaatactcagcccaatgccgctgaggaaacaccacag
gccaaacccaccgaaaccggcaagggccctcaggcaagcgataccaaaggcagtcaggaa
ggccagaaggaagagacccggggtcgcgagaaagacgctgacaccgccaaggtgcagccc
gagactggcagcaacgaagtggacgcggcacaggctgacacatcgacaggcgaggccact
gggcagcaaggcaacggtcagccacaggagcaggaagggtccagcgggggcggccgcagt
ggcagtggtcgcagccggggtcgtcgcggagggcgtcgccgtcgtcggagcagcacgggt
aacaccgaaggccgccaggacgataatgatcgcaacccgcaaggtgaaggcgaaggcgaa
tccgacgacgcgtcatccagcgccgaacgggctcccaggaaacaggcttccgacaagcgt
gagcgcaccgaagagccacaggacaagccagccgaagacaagacccagaccaaggcgcct
gacgaggccccagcgaatgaccaggctcaaaagtctcctgccaaggccaaaacgggcacc
gaggacacccaggagctggcgaagctgacccatgaggagtccgtaccccactcccgcgca
ttgcaaaagcaggatgaagacgcgggctccaagcgcaaggccgataccgccgacgcagcc
acctccacgtccagtgaggctgactctggggagaaggcggcaaccgacgcccctgatgga
caggagaagagcggaccgtccaggcgtacccgcggtggccggagaagttcggggcgcagc
gaacgcagtgaggaaagccagggttctgggagcagtgagcgccgggtgtcacgggaggag
atggaaaagctccaggccgtggccaagcaggccacctccagcccggatgaatcacgggaa
cagcccgatcagccctccaccgaggaagcgtcggactcaaagaagtcaggccagtaa
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