Shimwellia blattae: EBL_c03420
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Entry
EBL_c03420 CDS
T02111
Symbol
yhdA
Name
(GenBank) cyclic diguanylate phosphodiesterase (EAL) domain protein
KO
K18765
RNase E specificity factor CsrD
Organism
ebt
Shimwellia blattae
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebt03019
]
EBL_c03420 (yhdA)
Messenger RNA biogenesis [BR:
ebt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EBL_c03420 (yhdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
AFJ45470
UniProt:
I2B4L6
LinkDB
All DBs
Position
349677..351617
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AA seq
646 aa
AA seq
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MRLTTKFSAYLALLTGLAIAATLFGASLSFYTSVQTKSALRVEAVATIVDNQLLNHSPAE
LNRYVQALMIPSDIVRFELLSGGRTLLDSQLHGTYAPGRKALRAHVVTITLLKHPGMQVR
MTYHDPAAEYYQSVLTMGPLTIAIGFMVLVVFFSSRWVKRQLRGQEAMELRAERILRGER
SKAVRGSAVEWPYRTSLALDRLLDELQEAGVRRHRVDTLIRSYAARDDKTGLNNRLFFDN
QLATLLDEREGDGMHGVVMLIRLPDADVLRDSWGEADVEEVMIRIVDMISSFITRYPGAL
LARYFRNDFAVLLPHRTLKEADSMASQLVKQIDALPGSRIVDRNNMLHIGVCAWRSGQST
EQIMENAAEAVRHAALQGGNGWSVYDDSLPEKGRGNVRWRTLIERTLQSQGPRLYQKPAV
LNEGQVHHREILGRIADGEQEVVAAEYILMVRQFGLSESYDRLMLSRVLQLLTIWPEETF
AVAVSVESLIRDTFQRWLRDTLMQCERSRRQRLIVELEEADVSQHGERLERVVRLIKGLG
ARVAVSQAGLTVVSSAYIPELGVEFIKLHPGLVRNIDKRTENKLFVQSLVEACRGQGTLV
FASGVRTRSEWQTLLSCGVSGAQGDFFAESRPLDLQVKKYLQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgaccaaattttcagcatatttagcactgttaaccgggctggccattgcc
gctaccctgtttggtgcctcactgagcttttatacctcagtccagactaaaagcgcgctg
cgggtagaggcggtggccaccattgtcgataaccagttgctgaaccactccccggcggag
ctgaaccgctatgttcaggcgctgatgatcccctccgatattgtccgcttcgaactgctc
agcggcgggcgtactttactggatagccagctgcacggcacctatgccccgggccgcaag
gcgctccgggcgcatgtggtcaccattacgttgctcaaacacccgggaatgcaggtgcgg
atgacctatcacgacccggcagcagagtattaccagtcggttctgaccatggggccgctg
actatcgccattggttttatggtgctggtggtctttttttcttcccgctgggtgaagcgc
cagttgcggggccaggaggcgatggagctgcgggcggagcgcattttacggggcgagcgg
agcaaagcggtgcgcggcagcgccgttgagtggccctatcgcaccagccttgccctggac
cgcctgctggatgagctacaggaggccggtgtccggcgccaccgggttgatacgctgatt
cgcagctacgccgcccgggacgataaaaccggcctgaacaaccggctgtttttcgataac
cagctggcgaccctgcttgatgagcgcgaaggcgacggtatgcacggggtggtgatgtta
atccgcctgccggatgccgatgtgctgcgcgactcctggggagaggcggatgtggaagag
gtgatgatccggattgtggatatgatctcttcttttattacccgctaccccggcgcgctg
ctggcccgctacttccgcaacgatttcgcggtattgctgccccaccggacactgaaagag
gccgacagcatggccagccagctggtgaagcagattgacgcgctaccgggctcgcgcatt
gtggatcgcaataatatgctccatatcggcgtctgtgcctggcgcagcggccagtcgact
gagcagatcatggaaaatgccgccgaagcggtgcgccacgcggccctgcagggcgggaat
ggctggtcggtttatgacgactccctgccggaaaaagggcgcggaaatgtacgctggcgc
acgctgattgagcgtactctgcaaagccaggggccgcgtctgtaccagaaacccgccgtg
ctgaacgaggggcaggtacatcaccgggagatcctgggccgcattgcggatggtgagcag
gaggtggttgccgcagaatatattctgatggtgcgccagttcgggttatcggaatcttat
gatcggctgatgctctcccgggtgttgcagttgctgaccatctggccggaagagaccttc
gcggtggcggtgtcggttgagtcgctgattcgcgacacctttcagcgctggctgcgcgat
acgctgatgcagtgcgagcgcagccgccgccagcggctgattgtggagctggaagaggcg
gatgtgagccagcacggggagcgtcttgagcgtgttgttcgcttaattaaagggctgggc
gcccgggtggcggtctcccaggcggggctgacggtggtgagcagcgcctatattccggag
ctgggggtcgaatttattaaacttcacccggggctggtgcgtaatattgataagcgcacg
gagaataaactttttgtccagagtcttgtcgaagcctgtcgtggccagggaacgctggtt
ttcgcttcgggggtgcgcacccgcagcgagtggcaaaccttgctttcctgcggggtcagc
ggtgcgcagggggatttttttgctgaatcccggccgctggatctgcaggtgaaaaaatat
ttgcaaagatattcggtttga
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