Shimwellia blattae: EBL_c04230
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Entry
EBL_c04230 CDS
T02111
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBL_c04230 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebt03019
]
EBL_c04230 (deaD)
03009 Ribosome biogenesis [BR:
ebt03009
]
EBL_c04230 (deaD)
Enzymes [BR:
ebt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EBL_c04230 (deaD)
Messenger RNA biogenesis [BR:
ebt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EBL_c04230 (deaD)
Ribosome biogenesis [BR:
ebt03009
]
Prokaryotic type
rRNA helicases
EBL_c04230 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AFJ45549
UniProt:
I2B4U5
LinkDB
All DBs
Position
434147..436045
Genome browser
AA seq
632 aa
AA seq
DB search
MAEFETTFSDLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSSLHGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMQDPQEVRIQSSVTTRPDISQSYWTAWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKLQPEAEGELDV
ETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRRGDRNDRGDRGERGDRPRRERRD
VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVL
QHFTRTRILNKPMNMQLIGDAQPRPDRGGRSFGGERREGGRRDGGRGFGGERREGGRGDG
RRFSGERRDGNRGPRRDDSAPRPARRFGGDAS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccactttttcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgtattccacatctg
cttaatggccgcgacgtgctgggtatggcccagaccggtagcggtaaaactgcagccttc
tctttaccgctgctgaacaaccttgatcctgagctgaaagcaccgcagatcctggtgctg
gccccgacccgcgaactggcggttcaggtggctgaagccatgacggatttctctaaacat
atgcgtggcgtaaacgtagtggccctgtatggcggccagcgttatgacgtgcagttacgc
gccctgcgccaggggccgcagattgtggtaggtacgcctggccgtctgctggatcacctg
aaacgtggcaccctgaacctctccagcctgcatggcctggtgctggatgaagcagacgaa
atgctgcgcatgggctttattgaagacgttgaaaccatcatggcgcagatcccggctgaa
catcagaccgcgctgttctctgccaccatgccggaagcgattcgccgtattacccgccgc
tttatgcaggatccgcaggaagtgcgtatccagtccagcgtaaccacccgcccggacatc
agccagagctactggactgcatggggcatgcgcaagaacgaagccctggtacgcttcctg
gaagcggaagattttgatgcggcgattatcttcgtgcgcaccaaaaacgcgaccctggaa
gtggcagaagccctggagcgcagtggctataactctgccgcgctgaacggcgacatgaac
caggcactgcgtgagcagacgctggaacgcctgaaagatggccgcctggatattctgatc
gccaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtagtgaactac
gatatcccgatggatgctgaatcttacgttcaccgtatcggccgtaccggtcgtgcgggc
cgtgcgggccgtgcgctgctgttcgttgaaaaccgcgaacgccgcctgctgcgcaacatt
gaacgcaccatgaagctgaccatccctgaagtggagctgccgaacgcagaactgctgggc
aaacgtcgtctggaaaaattcgccgctaaagtccagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcaaaactgcagccggaagcggaaggtgagctggatgtt
gaaaccctggccgcagcgctgctgaaaatggcccagggcgaacgcccgctgatcctgccg
ccggatgcgccgatgcgcccgcgtcgcgaattccgtgagcgtgatgatcgccgtggcgac
cgtaacgatcgtggtgaccgtggcgagcgcggtgatcgtccgcgccgtgaacgtcgcgac
gttggcgatatgcagctgtaccgcattgaagtgggccgtgatgacggtgttgaagtgcgc
catatcgtgggtgcaattgccaacgaaggcgatatcagcagccgctatatcggtaacatc
aaactgtttggtacgcactccaccattgagctgccgaaagggatgccgggcgatgtgctg
cagcactttacccgtacccgcattctgaacaagccgatgaacatgcagttaatcggtgat
gctcagccgcgcccggatcgtggtggccgtagcttcggtggtgagcgccgcgaaggtggc
cgtcgtgacggtggtcgtggttttggcggtgagcgccgtgaaggtggccgtggtgatggt
cgtcgtttcagcggcgagcgtcgtgacggtaaccgcggcccgcgccgtgatgactccgcc
ccgcgcccggctcgtcgtttcggcggtgacgcttcctga
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