Shimwellia blattae: EBL_c05320
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Entry
EBL_c05320 CDS
T02111
Symbol
rpoD
Name
(GenBank) RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
ebt
Shimwellia blattae
Pathway
ebt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EBL_c05320 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebt03021
]
EBL_c05320 (rpoD)
Transcription machinery [BR:
ebt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EBL_c05320 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Cwf_Cwc_15
TMPIT
HTH_SUN2
FlgN
Motif
Other DBs
NCBI-ProteinID:
AFJ45657
UniProt:
I2B553
LinkDB
All DBs
Position
complement(548296..550140)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLGENTTDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEETRLSDLITGFVDPNAEEDMAPTA
THVGSELSQEDMDDDEDEDDDSDDDSSDDDNSIDPELAREKFAELRAQYEVTRDTIKAKG
RSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLRDVTEDVQRCLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcatccaggtggtagaagaagcacct
gatgccgatgacctgatgttgggcgaaaacaccaccgataccgatgaagacgcagcagaa
gcggcggctcaggtgttatccagcgttgaatctgaaattggccgtaccaccgacccggtg
cgcatgtatatgcgtgagatggggaccgttgaactgttaacccgtgaaggggaaatcgat
atcgccaagcgtatcgaggacggtatcaaccaggttcagtgctccgttgccgaatacccg
gaagcgattacctacctgctggaacagtacgatcgtgttgaagccgaagagacacgactg
tctgatctgattactggttttgtcgatccgaacgcggaagaagacatggcgcccaccgcg
acccatgttggctctgagttgtcccaggaagatatggacgatgacgaggatgaagacgac
gacagcgacgacgacagctccgatgatgacaacagcatcgatccggaactggcccgtgaa
aaatttgccgaactgcgcgcccagtatgaagtcacccgcgacacgatcaaagccaaaggc
cgcagccacgctaccgctcaggaagagatcctcaaactgtctgaagtgttcaaacagttc
cgtctggtgccgaaacagttcgactatctggtcaacagcatgcgttcaatgatggatcgc
gttcgtactcaggaacgtatcatcatgaagctgtgtgttgaacagtgcaaaatgccgaag
aagaacttcatcaccctgttcaccggcaacgaaaccagcgaaacctggtttaatgcagcc
attgccatgaacaagccgtggtctgaaaagctgcgcgacgtgactgaagacgtgcagcgc
tgcctgcagaaactgcagcagatcgaagaagaaaccggcctgaccattgagcaggtgaag
gatatcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatg
gttgaagcaaacttgcgtctggttatctctatcgccaagaaatacaccaaccgcggtctg
cagttcctcgatcttatccaggaaggcaacatcggcctgatgaaagcggtagataaattc
gaataccgccgtggttataagttctccacttatgccacctggtggatccgccaggctatc
acccgctccatcgccgaccaggcccgtaccatccgtatcccggtacatatgattgagacc
atcaacaagctcaaccgtatctcccgccagatgctgcaggaaatgggccgggaaccgacc
ccggaagagctggctgaacgcatgctgatgccggaagacaagatccgcaaagtgctgaag
attgccaaagagcctatctccatggaaacaccgattggtgatgatgaagattcgcatctg
ggggatttcatcgaggataccaccctcgaactgccgctggattctgccaccaccgagagc
ctgcgcgccgccacgcacgatgttctggccggcctcaccgcccgtgaagccaaagtgctg
cgtatgcgtttcggtatcgacatgaataccgaccatacgctggaagaagtgggtaaacag
ttcgatgttacccgcgaacgtatccgtcagatcgaagcgaaagcgctgcgtaagctgcgc
cacccgagccgctctgaagtgctgcgtagcttcctggacgactga
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