Shimwellia blattae: EBL_c16220
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Entry
EBL_c16220 CDS
T02111
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ebt
Shimwellia blattae
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebt03032
]
EBL_c16220 (topA)
03400 DNA repair and recombination proteins [BR:
ebt03400
]
EBL_c16220 (topA)
Enzymes [BR:
ebt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EBL_c16220 (topA)
DNA replication proteins [BR:
ebt03032
]
Prokaryotic type
DNA Topoisomerases
EBL_c16220 (topA)
DNA repair and recombination proteins [BR:
ebt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EBL_c16220 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AFJ46716
UniProt:
I2B862
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Position
1687451..1690057
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AA seq
868 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAHKKSADSAASKTAKTAK
KGKKDERTALVNRMGINPWHNWDADYEILPGKEKVVSELKSLAEKADHIYLATDLDREGE
AIAWHLREVIGGDEQRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGY
MVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANLSTPAGDTLPVE
VSHYLDKPFRPASQQETMAAVSLLEKASYQVVEREDKPTSSKPGAPFITSTLQQAASTRL
GYGVKKTMMLAQRLYEAGYITYMRTDSTNLSQDAVTMARDYIGDNFGAKYLPAKPNQYAN
KENSQEAHEAIRPSDVNVLAESLKDMEADAQKLYQLVWRQFVACQMTPAKYDSTTLTVGA
GDYRLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNQGDTLSLIDLQPAQHFTKPPARF
SEASLVKELEKRGIGRPSTYASIISTIQDRGYVKVENRRFYAEKMGEIVTDRLEENFREL
MNYDFTAQMEDRLDLVASHEEEWRHVLDSFFSDFTRQLEVAEKAPEEGGMRTNQMVLTSI
ECPTCGRQMGIRTASTGVFLGCSGYALSPKERCKTTINLIPENEVLNVLEGDDAETNALR
AKRRCQKCGTAMDSYLIDPKRKIHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSE
MHLKMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAA
GIFLAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDEKGNKTVVRFSRKTKQ
QYVSSEKDGKATGWSAFFVDGKWTETKK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagctctcgtcatcgttgagtccccggcaaaagccaaaacgatcaacaaatat
cttggtaacgactatgtggtcaaatccagtgttggtcatatccgcgatttgccgaccagt
ggctcagctcacaaaaagagcgctgactccgccgccagcaaaacggccaaaacggctaaa
aagggcaaaaaagatgagcgtacggcgctggttaaccgtatgggcatcaatccctggcat
aactgggatgcggactatgagatcctgcccggtaaagagaaggtagtttcagaactgaaa
tcccttgccgaaaaagcagatcacatctatctcgcaactgaccttgaccgcgaaggggaa
gccattgcctggcacctgcgggaggttatcgggggcgacgagcaacgctacagccgggta
gtgtttaacgaaattactaaaaacgctatccgtcaggcttttgaaaaaccgggcgaactg
aatatcgaccgggttaacgcccagcaggcgcgccgttttatggaccgcgtggtggggtat
atggtctcgccactgctgtggaagaagatagcccgcggcctgtctgccgggcgcgtacag
tctgtggctgtgcggctggtggttgagcgcgagcgggaaattaaagcgtttgtaccggaa
gagttctgggaaattgacgcgaatttatccacccctgcgggggatacgctgccggttgag
gtttctcactatcttgataaacctttccgtcctgccagccagcaggaaaccatggcggcg
gtcagcctgctggaaaaagccagctaccaggttgtggagcgggaagataaacccaccagc
agcaagcccggtgcgccgtttattacctccaccctgcaacaggccgccagtacgcgcctg
gggtacggggtgaagaagaccatgatgctcgcccagcgtctgtacgaagcgggctacatc
acctatatgcgtaccgactccaccaacctgagccaggacgcggtcaccatggcccgtgac
tatattggcgacaattttggtgcgaaatatctgccggcgaaaccgaaccagtacgccaac
aaagagaactctcaggaagcgcacgaagcgattcgtccttccgatgtgaacgtactggca
gaaagcctcaaagatatggaggcggacgcccagaaactctatcaactggtgtggcgtcag
tttgtggcctgccagatgaccccggctaagtacgactccaccaccctgactgtcggggcc
ggtgattatcgccttaaagcccggggccgcattctgcgcttcgatggctggacaaaagta
atgccggcgcttcgcaaaggggatgaggaccgcacattaccggccgtcaaccagggcgat
acactgtcactgattgatttacaaccggctcagcactttaccaagccgcctgcgcgcttt
agcgaggcatccctggtaaaagagctggaaaaacgcggcattggtcgcccgtctacctat
gcgtcgatcatctccaccatccaggatcgtggttatgtcaaagtcgagaaccggcgcttc
tacgcggaaaaaatgggcgagatcgtcaccgatcgcctggaagagaacttccgcgagctg
atgaactacgactttaccgcccagatggaagatcgtctcgacctggttgccagccacgaa
gaagagtggcgccacgtgctggacagcttcttcagcgactttacccgccagcttgaagtg
gcggaaaaggcgccggaagagggcggcatgcgcaccaatcagatggtgctgaccagtatt
gagtgcccgacctgtggccgccagatggggatccgcaccgccagcaccggggtcttcctc
ggctgttccggctatgcgttatcgcccaaagagcgctgcaaaaccaccatcaacctgatc
ccggagaacgaagttctcaacgtgctggaaggggatgatgcggaaaccaacgccctgcgt
gcgaagcgccgttgccagaagtgcggcacggcaatggacagctaccttatcgatccgaaa
cgtaaaattcacgtgtgcggtaataaccccacctgtgacggttacgagattgaagagggc
gagttccgcatcaaagggtatgacggcccggtcgttgagtgcgagaaatgcggctctgaa
atgcacctgaaaatggggcgttttggcaagtacatggcctgcaccaacgaagagtgtaaa
aacacgcgtaagatcctgcgtaacggcgaagtggcaccgccaaaggaagatccggtgccg
ttaccggagctgccttgcgagaagtccgacgcttacttcgtgctgcgtgatggcgctgcg
ggtattttcctggcggccaataccttcccgaaatcccgggaaacccgcgcaccgttggtt
gaggagctctaccgcttccgcgaccgtctgccggaaaaattgcgctacctggccgacgcg
ccgcagcaggatgaaaaaggcaacaaaacggttgtccgcttcagccgtaaaaccaaacag
cagtatgtctcgtctgaaaaagacggtaaggcgaccggctggtcagcgtttttcgttgac
ggtaaatggactgaaacgaagaagtaa
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