Shimwellia blattae: EBL_c35680
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Entry
EBL_c35680 CDS
T02111
Symbol
rnr
Name
(GenBank) ribonuclease R (RNase R)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBL_c35680 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebt03019
]
EBL_c35680 (rnr)
03016 Transfer RNA biogenesis [BR:
ebt03016
]
EBL_c35680 (rnr)
Enzymes [BR:
ebt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EBL_c35680 (rnr)
Messenger RNA biogenesis [BR:
ebt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EBL_c35680 (rnr)
Transfer RNA biogenesis [BR:
ebt03016
]
Prokaryotic type
tRNA degradation factors
EBL_c35680 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
PF0610-like_N
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AFJ48623
UniProt:
I2BDL9
LinkDB
All DBs
Position
complement(3688809..3691262)
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AA seq
817 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILDLLAKRDKPANREEIAHALDITDEEQLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLKGTVMGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDVVLAQPLGADRKGRSEARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIHGARMGFMVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYVWPKP
VEEQIASLKEQVPEEAKTGRVDLRDLPLVTIDGEDARDFDDAVYCQKKRGGGWRLWVAIA
DVSYYVRPWTPLDKEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
ARGNLSSYKFYDAVMSSHARLTYTKVWHMLQGDQELREQYHPLVPHLEELHRLYKVLDQA
RAERGGISFESEEAKFIFNAERRIERIEKTERNDAHKLIEECMILANVAAARFVEKHKEP
SLFRIHDRPSTEAINAFRSVLAELGLELPGGSKPEPKDYGALLNSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLSLSSYAHFTSPIRRYPDLLLHRAIKYQLALSRGEHPDAKGTA
TGGWHYSMEEMLQLGAHCSMTERRADEATRDVADWLKCDFMQDQVGQVFSGVIASVTGFG
FFVRLDDLFIDGLVHVSSLDNDYYRFDQIGQRLIGESGGQTYRLGDKVEVRVEAVNMDER
KIDFSLISSQRVVRGAGKTARDKAKKAQGDGGKPSRRRNAGKRVNFEPDSAFRPQKSGAK
HGDKAKAKQGKKAKPSAKTQKIAAATKAKRAAKKKAD
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagaccctttccaggaacgtgaagcagaaaaatatgctaacccgatccccagc
cgggaatttattctcgatctgctggccaaacgcgataaaccggcaaaccgtgaagagata
gcccacgcgctggacattaccgatgaagaacaacttgaagcactgcgccgccggttacgc
gccatggagcgcgacggccagctggtctttacccgccgccagtgctatgccctgccggaa
aaactcgacctgctgaaaggcacggtgatggggcaccgggatggctacggctttttgcgc
gttgaaggccgcaaagatgatttgtacctctcctcagagcagatgaaaacctgcatccac
ggggatgtggtgcttgcccagccgctgggtgcggaccgtaaaggccgcagtgaggcccgg
gttgtgcgggtactggtgcccaaaaccagccagattgttggccgctactttaccgatgcc
ggtgtgggcttcgtagtgccggacgacagccgcctgagctttgatattctcattccgccg
gaagagatccacggcgcccgcatgggctttatggtggtggttgagctcacccagcgcccc
acccggcggacaaaagccgtggggaaaattgtcgaagtgctgggcgacaatatgggcacc
ggcatggcggtggatattgccctgcgcacccatgaaattccctatgtgtggccaaaaccg
gtcgaagagcagatagccagcctgaaagaacaggtgccggaagaggcgaaaacaggccgg
gtcgatctgcgcgatctgccgctggtcaccattgatggcgaagacgctcgcgactttgat
gacgcagtctactgccagaaaaaacgcggcggcggctggcgcctgtgggtagccattgct
gatgtcagctactatgtgcgcccctggaccccgctggacaaagaagcccgcaaccgtggc
acctcggtctatttcccctctcaggtggtgccgatgctgccggaagtgctgtctaacggc
ctgtgctccctgaacccgcaggtggaccgcctgtgtatggtgtgcgagatgaccatctcc
gcccgggggaatctctcttcttataaattctatgacgcggtgatgagctcccacgcccgc
ctgacatacaccaaagtctggcatatgttgcagggcgaccaggagctgcgtgagcagtat
cacccgctggtgccgcatctggaagagctgcaccggctgtataaagtcctcgatcaggcc
cgcgccgagcggggcgggatctcgtttgaaagcgaagaagctaaatttattttcaatgcg
gagcgccgcattgagcgcattgagaaaaccgagcgtaacgacgcccataagctgattgaa
gagtgcatgatcctggcgaacgtcgcggccgcgcgctttgtggaaaaacacaaagagccc
tcgttgttccgtatccacgatcgcccgtctaccgaggccattaacgccttccgctcggtg
ctggcggagctgggccttgaactgcccggcggcagcaaaccggagccgaaagattacggc
gcgctgctgaactccattgccgatcgtcccgaccatgaaatgctgcaaaccatgctgctg
cgctccatgaaacaggcgatttacgatccggaaaaccgtggccacttcgggttatcgctg
agctcctacgcgcactttacctcgccgattcgccgctacccggatctgctgctgcaccgg
gcgattaaataccagctggcgctgtcccgtggtgaacacccggacgctaaaggcaccgcc
accggtggctggcactacagtatggaagagatgctgcagctgggtgcccactgctcgatg
accgagcgccgggccgatgaagccacccgcgacgttgccgactggctgaaatgcgacttt
atgcaggatcaggtgggccaggtatttagcggcgtgatagccagtgtgaccggcttcggc
ttctttgtgcgccttgatgatctgtttatcgacgggctggtgcatgtctcctccctggat
aatgactactaccgttttgaccagataggccagcgcctgattggtgaatccggcggccag
acctaccggctgggcgataaagtcgaagtgcgggtcgaggcggtgaatatggatgagcgc
aaaatcgacttctcgctgatttccagccagcgggtggtgcgcggggccggtaaaaccgcc
agagacaaagccaaaaaagcccagggcgacggcgggaaaccctcacgccgccgtaatgcg
ggcaagcgggtgaactttgagccggacagcgccttccgcccgcagaaaagcggcgcaaaa
cacggcgataaggccaaagcgaaacaggggaaaaaagccaaaccgtcggcaaaaacccag
aaaatcgccgccgccaccaaagcaaaacgcgccgcgaagaaaaaagccgactga
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