Shimwellia blattae: EBL_c37210
Help
Entry
EBL_c37210 CDS
T02111
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EBL_c37210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebt03021
]
EBL_c37210 (rpoC)
03400 DNA repair and recombination proteins [BR:
ebt03400
]
EBL_c37210 (rpoC)
Enzymes [BR:
ebt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EBL_c37210 (rpoC)
Transcription machinery [BR:
ebt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EBL_c37210 (rpoC)
DNA repair and recombination proteins [BR:
ebt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EBL_c37210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFJ48768
UniProt:
I2BE14
LinkDB
All DBs
Position
complement(3850471..3854697)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAMQLHPLVCAAYNADFDGDQMAIHVPLTLEAQLEA
RALMMSTNNILSPANGDPIIVPSQDVVLGLYYMTRDRINAKGEGMVLTGPKEAERLYRSG
LAELHARVKVRITEFEKDEQGNFVAVTSIKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNACYRTLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKAEIVAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMENLQTETVINRHGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVARNTLLNEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVLSKGDGEQVAGGETVANW
DPHTMPVITEVAGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTGGGKDLRPALKI
VDANGDDVMIPGSDMPAQYFLPGKAIVQLEDGVKISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSSEFLEGEQVEYSRVKIANRELEANGKVAATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRRAAGEAPV
APQVSAEEASANLAELLNAGLGGNHDND
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaagccggagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgttatctgtgagaaatgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccgactgcgcacatctggttcctgaaatccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcgggatgaccaacctggaacgccgtcagatcctg
acggaagaacagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgctgaagctatccaggctctgctcaagaacatggatctggagcaggaatgcgaaacc
ctgcgcgaagagctgaatgaaaccaactctgaaaccaaacgtaaaaagctgaccaagcgc
atcaagctgctggaagcctttgtacagtctggtaacaagccggagtggatgattctgacc
gttctgccggtactgccgccagatctgcgtccgctggttccgctggatggcggccgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggcggcgccggatatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgccatcaccggctctaac
aagcgtccgctgaaatctctggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactccggccgttcggttattaccgtaggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctctggaactgttcaaaccgttc
atctatggcaagctggaactgcgtggccttgcgaccaccatcaaagccgccaagaaaatg
gtagagcgcgaagaagccgtggtctgggatatcctggatgaagttatccgcgaacacccg
gtcatgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcatttgaaccgatc
cttatcgaaggtaaagcaatgcagctgcacccgctggtgtgtgccgcatataacgccgac
ttcgatggtgaccagatggcaatccacgtaccgctgaccctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctctccccggcgaacggcgatcctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgaccgtatcaacgcc
aaaggcgaaggtatggtgctgactggcccgaaagaagcggaacgtctgtaccgctccggt
ctggctgagctgcacgctcgcgttaaagtacgtatcactgagttcgaaaaagacgagcag
ggtaactttgtggcggtaacgtctatcaaagacaccactgttggtcgtgcgatcctgtgg
atgatcgtgccgaaaggcctgccgtacagcatcgtgaaccaggcactgggtaagaaagcg
atctccaaaatgctgaacgcttgctaccgtaccctgggcctgaagccgaccgttatcttc
gctgaccagatcatgtacaccggctttgcttatgcagcccgttctggttcttccgttggt
atcgacgacatggttatcccggcgaaaaaagccgagatcgttgccgaagcggaagccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgctggcgaacgttacaac
aaagtcatcgatatctgggctgcggcgaacgatcgcgtatccaaagcgatgatggaaaac
ctgcagactgaaaccgtgattaaccgtcacggcgaagaagagcagcaggtatcgtttaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcccagattcgtcagctg
gccgggatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctacccacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgacccgtcgtctg
gttgacgtggcccaggatctggttgttaccgaagacgactgcggtacgttcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagaaccgctgcgcgatcgcgttctg
ggtcgtgtaacggcagaagacgttctcaagccgggcactgcggatattctggtggcgcgt
aatacgctgctcaacgagcagtggtgtgatctgctggaagagaactccgtagactccgtg
aaagtgcgttccgttgtatcctgtgacactgacttcggcgtgtgtgcacactgctacggt
cgtgacctggcccgcggccacctggtgaacaaaggtgaagcgatcggtgttatcgcggca
cagtccatcggtgaaccgggtactcagctgaccatgcgtaccttccacatcggtggtgcg
gcatctcgtgcggcagctgaatccagcattcaggtgaaaaacaaaggtagcatcaagctg
tctaacgccaagtctgttgttaactccagcggtaaactggttattacttcccgtaatacc
gagctgaagctgatcgacgaattcggccgtaccaaagaaagctataaagtgccttacggt
tccgtactgtctaaaggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccggttatcaccgaagtggcaggtttcgttcgctttactgacatg
attgatggccagaccatcacgcgccagactgacgaactgaccggtctgtcttccctggtg
gttctggattctgcagaacgtaccggtggtggtaaagacctgcgtccggcactgaaaatt
gttgatgccaacggcgacgacgtgatgatcccgggctctgatatgccggctcagtacttc
ctgcctggtaaagcgattgttcagctggaagacggcgttaagattagctccggtgacacc
ctggcgcgtattccgcaggaatccggcggtactaaagatatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcccgccgtccgaaagagccggcaatcctggctgagatcagc
ggtattatctccttcggtaaagagaccaaaggcaagcgtcgtctggtgatcacgccggtt
gatggtagcgatccgtacgaagagatgatcccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgcgttgaacgtggtgacgtggtttctgatggtccggaagcaccgcatgacatt
ctgcgtctgcgtggcgttcacgcggtaacccgttacatcgtgaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagccaccattgccagcgccggtagctccgagttcctggaaggtgagcaggtt
gaatactcccgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtggcggca
acctatgcccgcgacctgctgggtatcaccaaagcctctctggcaaccgagtccttcatc
tctgcggcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
actggttatgcgtaccaccaggatcgcgcccgtcgccgtgccgcgggtgaagcgcctgtt
gcaccgcaggtgagcgcagaggaagcctctgctaacctggcagaactgctgaacgcaggt
ctgggtggcaatcacgacaacgactga
DBGET
integrated database retrieval system
