Enterobacteriaceae bacterium S05: CUC76_18005
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Entry
CUC76_18005 CDS
T05725
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ebu
Enterobacteriaceae bacterium S05
Brite
KEGG Orthology (KO) [BR:
ebu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebu03019
]
CUC76_18005
Messenger RNA biogenesis [BR:
ebu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CUC76_18005
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
AWB63336
LinkDB
All DBs
Position
3612025..3613965
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AA seq
646 aa
AA seq
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MRLTTKFSAFITLLTSLTIFVTLIGASLSFYNGIENKVENRVQAVATMLDNRLITTSFDK
LEPQLDELMTPIEIVHIDFMLNGKPLYSHSRTDSYRPLGSHEQFREITVPSLKHPGITLH
LVYVDPMVNYFRSLSITAPLSISIGFMVVIIFFAVRWIRRQLAGQELLELRSTRILSGER
GPQVRGSVYEWPASTSSALDMLLSELQFASDQRSRMDTLIRSYAAQDSKTGLNNRLFFDN
QLATLLEDQEKVGAYGIVMMIRLPEFDLLRDNWGRAAAEEHYFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAMDALPPTRILDRDDMMHIGICSFRSGQSA
AQVMEHAEAATRNAVLQGSNSWSVYDDTLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TRDGRVHHRELMSRMYDGKEEVIAAEYMPMVLQFGLAEEYDRMQVTRLLPFLGFWPEENL
ALQLSVESLIRPRFQRWLRDALMQCEKSQRQRIIFELAEADVCQYIGRLQPVMRLVNALG
VRVAVVQAGLTLVGTSWIKQLDAELIKLHPGLARNIEKRSENQLLVQSLVEACKGMPMQV
FATGVRSRSEWLVLSQCGVTGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcctttatcacgctgctaactagcctgaccatcttt
gtcacgctgattggcgcttcgctgagtttttacaacggcattgagaacaaggtcgaaaac
cgggttcaggcggtggcgaccatgctggataaccggctcatcaccacctcttttgataag
cttgagccgcagctggatgagctgatgacgccgatagagatcgtgcatatcgatttcatg
cttaacggtaaaccgctctacagccactcccgaaccgacagctaccgcccgctgggcagt
catgagcaattccgtgagatcacggtcccgtcgttgaaacatcccggtatcaccctgcat
ctggtctacgttgacccgatggtgaactatttccgttcgctgtcaatcaccgccccgctg
tcgatctccatcggcttcatggtggtgattattttcttcgccgtccgctggatacgccgc
cagctggcaggtcaggaactgcttgagcttcgttccacgcgcatcctgagcggcgagcgc
gggccgcaggtgcgcgggtcagtctatgaatggcctgccagcaccagtagcgcgctggat
atgctgctgtcggagctgcaattcgccagcgatcagcgcagccggatggatacgctgatt
cgctcctatgcggcacaggattccaaaaccgggctgaacaatcgcctgttttttgacaat
cagttggccacgctgctggaagatcaggagaaggtgggggcgtacggcatcgtgatgatg
atccgtctgccggagtttgatctgctgcgggacaactggggacgagcggcggccgaagaa
cattacttcacgctaatcaacctgctctctacctttattatgcgttaccctggcgcgctg
ctggcccgctatcaccgtagcgacttcgccgtgctgctgccgcaccgcacgttaaaagag
gcggatagcatcgccggactgttgctgaaggccatggacgcgctgcctccgacgcgcatt
ctcgatcgtgacgatatgatgcatatcggcatctgttctttccgcagtggacaatcggcg
gcgcaagtgatggaacatgctgaagcagcaacgcgcaacgcggtgctgcagggcagcaac
agctggtcggtctatgacgatacccttccggagaaaggccgcggcaacgttcgctggcgg
acgctgatcgaacagatgctgagccgcggcgggccgcggttgtatcagaaacccgccgtc
actcgcgatggccgggtgcatcaccgtgaactgatgtcgcggatgtacgacggtaaggaa
gaggtgatcgccgccgagtatatgccgatggtgctgcagtttggcctggcggaggagtat
gaccgcatgcaggtgacgcgcctgctgccatttttaggcttctggcccgaggagaatctg
gcgctccagctgtcggtggagtcgctgatccgtccgcgattccagcgctggctgcgtgat
gctctgatgcagtgtgaaaaatcgcagcgtcagcggattatttttgaacttgctgaggca
gatgtttgtcaatatatcggccgtctgcagccggttatgcggttggttaacgcgcttggc
gttcgggtggcggtggttcaggcaggtttaaccctggtgggaactagctggatcaagcag
ctggatgcggagctgatcaaactgcatccggggctggcgcgcaatatcgaaaagcgcagc
gagaaccagctgctggtgcaaagcctggtggaagcctgtaaaggcatgcctatgcaagtt
tttgcgacgggcgtacgcagccgcagcgagtggctggtactgtcccaatgcggtgtcacg
ggcgggcagggggaattttttgccgcctcacagccacttgacacaaatgtgaaaaaatat
tcgcaaagatactcggtttga
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