Empedobacter brevis: F0358_02390
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Entry
F0358_02390 CDS
T06196
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
ebv
Empedobacter brevis
Pathway
ebv00521
Streptomycin biosynthesis
ebv00523
Polyketide sugar unit biosynthesis
ebv00525
Acarbose and validamycin biosynthesis
ebv00541
Biosynthesis of various nucleotide sugars
ebv01100
Metabolic pathways
ebv01110
Biosynthesis of secondary metabolites
ebv01250
Biosynthesis of nucleotide sugars
Module
ebv_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
F0358_02390 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
F0358_02390 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
F0358_02390 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
F0358_02390 (rfbB)
00525 Acarbose and validamycin biosynthesis
F0358_02390 (rfbB)
Enzymes [BR:
ebv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
F0358_02390 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
3Beta_HSD
adh_short
NAD_binding_10
NmrA
DUF2532
KR
tRNA-synt_1f
Motif
Other DBs
NCBI-ProteinID:
QES91647
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Position
complement(491247..492293)
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AA seq
348 aa
AA seq
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MKTILITGGAGFIGSHVVREFVLNYPETKIINLDALTYAGNLENLKDIEDRPNYEFVKAD
IVDAQHILEVFEQYQPDGVIHLAAESHVDRSITNPLEFVMTNVIGTVNLLNAAKTIWNGN
FEGKRFHHVSTDEVFGALGDEGFFTEETSYDPHSPYSASKASSDHFVRAYHDTYGLPVVM
TNCSNNYGPNHFPEKLIPLCIHNILNNNPLPIYGDGKYTRDWLFVIDHAKAIDLVFHEAE
NGASYNVGGFNEWKNIDLVKELCKQMDEKLGREVGTSEQLITFVKDRPGHDLRYAIDATK
INEELGWKPSVTFEEGLSKTIDWFLENQEWLDNVTSGDYKNYYKKQYN
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactattttaataacaggaggtgctggttttatcggatcgcatgtcgtacgagaa
tttgtcttaaactatcctgaaacaaaaatcattaatttagatgctttaacgtatgcaggt
aatttggaaaatctgaaagatattgaagatcgtccaaattatgaatttgtaaaagctgat
attgtggatgcacaacatatattagaggtttttgaacagtatcaaccggatggtgttatt
catttggctgcggaatcgcatgtagatcgttcgattactaatccgttagagtttgtgatg
acaaacgttatcggaacagtaaacttgttaaacgctgctaaaacaatttggaatggtaat
tttgagggaaagcgttttcatcatgtctcgactgatgaggtttttggagcattgggagat
gaaggattttttacggaagaaacgtcttatgatccacattctccttattctgcttctaaa
gcatcttcagatcattttgtaagagcttaccacgatacgtatggtttacccgttgtgatg
acaaactgttcaaataattacggtccgaatcattttcctgagaagctaatcccattgtgt
attcacaatattctgaacaataatccacttccaatatacggagacggtaaatatacacgc
gattggttgtttgtgattgatcatgccaaagcgattgatttagttttccatgaggcagaa
aatggagcatcttataatgtaggaggttttaacgaatggaaaaatatcgatttagtgaaa
gaattgtgtaaacaaatggatgaaaaattaggacgtgaagtaggtacttcagaacaatta
atcacgtttgtaaaagatcgtcctggacacgatctacgttatgctattgatgctactaaa
attaatgaagaattgggatggaaaccatccgtcacttttgaagagggtttatccaaaaca
attgattggtttttagaaaatcaagaatggttggataatgtaacttccggcgattataaa
aattactataagaaacagtataattag
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