Empedobacter brevis: F0358_07350
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Entry
F0358_07350 CDS
T06196
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
ebv
Empedobacter brevis
Pathway
ebv00541
Biosynthesis of various nucleotide sugars
ebv01100
Metabolic pathways
ebv01250
Biosynthesis of nucleotide sugars
Module
ebv_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
F0358_07350 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ebv01005
]
F0358_07350 (kdsB)
Enzymes [BR:
ebv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
F0358_07350 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
ebv01005
]
Lipid A
F0358_07350 (kdsB)
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
IspD
Motif
Other DBs
NCBI-ProteinID:
QES92545
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Position
1592821..1593564
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AA seq
247 aa
AA seq
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MKKIAVIPARYAASRFPGKLMEQLGDKTVIRMTYENVVETQLFDDVFVVTDSDLIFNEIV
NHGGKAIRSNKEHETGSDRIAEAIENIECDIILNVQGDEPFVNKKALADLLSSFDGKIGQ
TVDVATLKESITGEESINNPNFVKVVTDSNNFALYFSRSPIPFAREDGFTPKYFRHLGIY
AFRKEALLNFSKLMMRQNEKAEKLEQLRYLEYGMKIKVIETESIGVGIDTPEDLERAKKY
LSTIVKK
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaaatagccgtaattccagcacgatatgcagcttctcgttttcccggaaaacta
atggagcagttaggagataaaaccgtcattagaatgacgtatgaaaatgttgtggaaact
caactgtttgatgatgtttttgtcgtcacagattctgatttgatttttaatgaaattgtc
aatcatggcggaaaagcaattagaagtaacaaagaacatgaaacaggaagcgatcgaata
gcggaagctatagaaaatattgaatgtgatattattttaaatgtgcaaggagacgagcca
tttgttaacaaaaaagcattggcagatttactttcttcttttgacggaaaaattggacaa
acagttgatgtcgcaacgttaaaagaatctattactggagaagaatctattaacaaccct
aattttgtaaaagtggtaacggatagcaataattttgcactttatttttctcgttctcct
attccgtttgcaagagaagatggcttcacgccaaagtattttcgtcatttaggaatttat
gcattcagaaaggaagcattattgaatttctcgaaattaatgatgcgccaaaatgagaaa
gcagaaaaattagaacaattgcgttacttagaatacggaatgaaaattaaagtaatcgaa
actgaatcaataggagtaggaattgatacacctgaagatttggaacgtgcaaaaaagtat
ttatccactattgttaaaaaataa
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