Empedobacter brevis: F0358_07875
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Entry
F0358_07875 CDS
T06196
Symbol
kdsA
Name
(GenBank) 3-deoxy-8-phosphooctulonate synthase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
ebv
Empedobacter brevis
Pathway
ebv00541
Biosynthesis of various nucleotide sugars
ebv01100
Metabolic pathways
ebv01250
Biosynthesis of nucleotide sugars
Module
ebv_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
F0358_07875 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ebv01005
]
F0358_07875 (kdsA)
Enzymes [BR:
ebv01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
F0358_07875 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
ebv01005
]
Lipid A
F0358_07875 (kdsA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
DUF7486
Motif
Other DBs
NCBI-ProteinID:
QES92637
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Position
1697561..1698370
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AA seq
269 aa
AA seq
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MIETLSKIKHKDSPNFFLLAGPCAIENEEMALRIAEKVVNITNKLEIPYIFKGSFKKANR
SRIDSFTGIGDEEALKIIQKVGETFDVPTTTDIHEPFHAEMAAAYVDVLQIPAFLVRQTD
LVVAAAKTGKHVTLKKGQFLSPEAMKFPVEKVTDSGNNNVAIIERGTMLGYGDLVVDYRG
IPVMQNYAPVILDITHSLQQPNQASGVTGGKPELIETIAKAGIAVGADGIFIETHPDPKN
AKSDGANMLQLDLLEGLLTKLVKVRQAIL
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaactttatcaaagataaaacacaaagattcgcccaacttctttttacttgct
ggtccatgcgccattgagaacgaagagatggctttgagaattgctgaaaaagtagttaat
attactaataaattggagattccttatatttttaaaggatcttttaagaaagcaaaccgt
tctcgtattgatagttttacaggaattggtgatgaagaagcattgaaaattatccaaaaa
gtaggagagacttttgatgttccaacaacaacggatattcatgagccttttcatgcagaa
atggctgcagcttatgtagatgttttgcaaattcctgcttttttggttcgtcaaactgat
ttagtcgttgccgctgcaaaaacaggtaaacatgtaacgttgaaaaaaggacagtttctt
tctccggaggccatgaaatttcctgtagaaaaagtaacagattccggaaataataatgta
gcaattatcgaacgtggtacaatgttaggttatggcgatttggtcgtagattatcgtgga
attcctgttatgcaaaattatgcaccggttattcttgatattacgcattcattgcaacaa
cccaatcaagcatcgggcgtgacaggaggaaagccggaattaatagaaacgattgcaaaa
gctggtattgctgttggggcagatggtatttttattgaaacacatccagatcctaaaaat
gcaaaaagtgatggagcaaatatgttgcaattagatttgttagaaggattgttaactaaa
ttggtgaaagttcgtcaggcaattctataa
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