Empedobacter brevis: F0358_09185
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Entry
F0358_09185 CDS
T06196
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ebv
Empedobacter brevis
Pathway
ebv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0358_09185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebv03019
]
F0358_09185
Enzymes [BR:
ebv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0358_09185
Messenger RNA biogenesis [BR:
ebv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0358_09185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
SNF2-rel_dom
Helicase_C_2
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
EB1
CheB_methylest
DsrH
Motif
Other DBs
NCBI-ProteinID:
QES92875
LinkDB
All DBs
Position
1965963..1967114
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AA seq
383 aa
AA seq
DB search
MKFSDLNIIQPILNAIDSAGYESPTEIQRQSIPLVLEGNDMIGCAQTGTGKTASFAIPIL
QLLHGKPKQNKAIRTLIITPTRELAVQIDDNFKLYSKNLKLKSLAIFGGVSQNKQVGSIK
NGVDILIATPGRLLDLMSQGIIKLNQIEILVLDEADRMLDMGFVNDIKKILKKVPEERQT
LFFSATMPKSIRKFANTILNHPKEINVTPVSSTAETIQQSVYFAEKAEKELLLVKLLKEN
AERTLVFTRTKHGANRLVKKLEKSKILSAAIHGNKTQNARQRALNDFKDNKIQVLIATDI
AARGIDIDMLSNVINYELPNVPETYVHRIGRTGRAGKEGVARSFCSIEEKKDLRNIEKLI
GTKIKVEKVNLKPVQKVEKIKTI
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagatttaaatatcatacaaccaattttaaatgcaattgattcggctggt
tacgaaagtccaactgagattcagcgccagtctattcctttagttttagaggggaacgat
atgataggttgcgcacaaacaggaacagggaaaacagcatcttttgctattccaattttg
cagttattacacggaaaaccgaaacaaaataaagcaataagaacattaattataacacca
acgagagaattagcggtgcagattgatgataatttcaaattatatagtaaaaatttgaag
ttaaaaagtttagcaatttttggaggagtctctcaaaataaacaagtcggttctataaaa
aatggagttgatattttaattgcaactcccggtcgtttattagatttgatgtcgcagggt
atcataaaattaaaccaaattgaaattcttgttcttgatgaagcagatcgtatgttagat
atgggatttgtaaatgatattaagaaaattcttaaaaaagttccggaagaaagacaaaca
ttattcttttcggctacgatgccaaaatctattcgaaaatttgcgaatacgattttaaat
caccccaaagaaattaatgtaacaccagtttcttcaaccgcagaaacaattcagcaatct
gtttattttgcagaaaaagcagaaaaggaactccttttagttaaattgctaaaagaaaac
gctgagaggacattggtttttacgagaaccaaacatggggcaaatcgattggttaaaaaa
ttagagaaatctaaaattctttcggctgcaattcatggaaacaaaacacagaatgcacgt
cagagagcattgaatgattttaaagacaataaaatacaggtgcttatagcaacggatatc
gctgcaagaggaattgacattgatatgctgtctaatgtcattaattatgaattaccaaat
gttcctgaaacctatgtacatcgtatcggaagaacaggacgagcaggtaaagaaggtgtt
gcgagatctttttgttcaattgaagaaaagaaagatttaagaaatattgaaaagttaatc
ggaaccaaaattaaggtggaaaaagtgaacttgaaaccggtacaaaaagtagaaaaaata
aaaacaatataa
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