Empedobacter brevis: F0358_10935
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Entry
F0358_10935 CDS
T06196
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ebv
Empedobacter brevis
Pathway
ebv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0358_10935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebv03019
]
F0358_10935
03009 Ribosome biogenesis [BR:
ebv03009
]
F0358_10935
Enzymes [BR:
ebv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0358_10935
Messenger RNA biogenesis [BR:
ebv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0358_10935
Ribosome biogenesis [BR:
ebv03009
]
Prokaryotic type
rRNA helicases
F0358_10935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RAG1_ZnH2
CMS1
AAA_30
Cas3-like_C_2
RecG_N
Motif
Other DBs
NCBI-ProteinID:
QES93186
LinkDB
All DBs
Position
2308225..2310102
Genome browser
AA seq
625 aa
AA seq
DB search
MITFKELGLQDDILTAIEKMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLP
ILNNLATDSKSVQAIILCPTRELCLQIAKELESFSADMRGVRVQAVYGGADIVKQIRGLK
DNPQIVVGTPGRTMDLIKRNALKINDITWTVLDEADEMLNMGFRDEIDSILETTPEEKQT
LLFSATMPSEVRRIASEYMHNPVEIAVSKVNTASKNIEHHVYLVRSSDRYLALKRLADYY
PNIYGIVFCRTRREAKDVADKLMQDGYNADALHGDLSQSQRDHVMDKFRNQNIQILVATD
VAARGIDVNELTHVINFNLPDDPEVYVHRSGRTGRAGNKGISIIISGGREARKIRDLEKL
IASKIEPKNVPTGAEICEKRLISLIEKIENIEVDEELIEPYMETVNEKLANIDRDTLLKR
FLTVEFNSFLEYYKNTKDITAEGDRGDRGDRSSNRRGGRDFSRFFINIGQKHNLRVPNLI
GLINEQTRNRNIEIGKIEILRNFSFFEVDTQFESLVLESFKDAQRDGVDLDVQISKPEPR
RGDGDRRGGDRRRSGGDSRGRGYNSRRDNDRERSGGYRGGDRDRDRGGYRGGDRDRDSRD
SRGGDRGGYRGGDRNRTGNSRRGRD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgattacattcaaagaattaggacttcaagatgatatcctaactgcaattgagaagatg
ggattcgttagtccatctccaatccaagaaaaagctattcctcaaatcctttcatcagat
caagatgttattgcattggcgcaaacaggtactggaaaaacagcagcattcgggcttcca
atcttaaacaatttagcaacagattcaaaatcggttcaggcaattatcttatgcccgaca
cgtgagttatgtttacaaattgcaaaagaattagaatctttttcagcagatatgcgcgga
gtgcgtgtacaagcagtttacggtggagctgacattgtaaaacaaattagaggattaaaa
gataatccgcaaatcgttgtaggaacaccaggtcgtacaatggatttaataaaacgtaat
gcattaaaaattaatgacattacttggacagttttagatgaagctgatgagatgttgaac
atgggattccgtgacgaaatcgattcaattttagaaactactccagaagaaaaacaaaca
ttattattctcagcaacgatgccttcagaggttcgtcgtatcgcttcagaatatatgcac
aatccggtagagattgctgtaagtaaagtaaatactgcatctaaaaatatcgagcaccac
gtttatttagtacgttcttctgatcgttacttagctttaaaacgtttagccgattattac
ccaaatatttatggtattgttttctgtagaactcgtcgcgaagcgaaagatgtagcagat
aaattaatgcaagatggttataatgcagatgcattgcacggagatttatctcaatctcaa
cgtgaccatgtgatggataaattccgtaaccaaaacattcaaatcttagttgcgactgat
gttgctgctcgtggtattgatgttaacgaattaacacacgtaatcaactttaacttacca
gatgatccggaagtttatgttcaccgttctggtcgtacaggtcgtgcagggaacaaagga
atttctattatcatttctggtggtcgtgaggctcgtaaaattagagatttagaaaaatta
attgcatctaaaattgaacctaaaaatgttccgacaggagctgagatttgtgagaaacgt
ttaatttctttaatcgagaaaatcgaaaatattgaagttgatgaagaattaatcgaacca
tacatggaaacggttaacgaaaaattagcaaatattgatcgtgatacattgttaaaacga
ttcttaacggtggagtttaattctttcttagaatattacaaaaatacaaaagatattact
gctgaaggtgaccgcggtgatagaggagatcgttcttctaatcgtcgtggtggtcgtgat
ttctcaagattctttattaacattggtcaaaaacacaacttacgtgttccaaatttaatt
ggattgattaacgagcaaacacgtaaccgcaacatcgaaatcggaaaaattgaaatttta
cgtaatttctctttcttcgaagtggatacacaattcgaatcattggtattagaatctttc
aaagatgcgcaacgtgatggagtagatttagatgttcaaatttctaaaccggaaccaaga
cgtggtgatggagaccgtcgtggaggagatcgccgtcgtagcggtggtgattctcgtgga
cgtggttacaacagccgtcgtgataatgaccgtgaaagaagcggaggttacagaggtgga
gaccgtgatcgtgacagaggtggttaccgtggaggtgatcgtgaccgcgatagccgtgat
agtagaggaggagatcgtggtggataccgcggtggagaccgtaacagaacgggaaactct
agaagaggtagagattaa
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