Empedobacter brevis: F0358_14405
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Entry
F0358_14405 CDS
T06196
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ebv
Empedobacter brevis
Pathway
ebv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0358_14405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebv03019
]
F0358_14405
03400 DNA repair and recombination proteins [BR:
ebv03400
]
F0358_14405
Enzymes [BR:
ebv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0358_14405
Messenger RNA biogenesis [BR:
ebv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0358_14405
DNA repair and recombination proteins [BR:
ebv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F0358_14405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
SpoU_sub_bind
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QES93830
LinkDB
All DBs
Position
3011031..3012893
Genome browser
AA seq
620 aa
AA seq
DB search
MTPKEILFSYWNYPSFKTPQEEIISSVLNGKDTLAILPTGGGKSLCYQIPSIIFEGLTLV
ISPLIALMKDQVQNLQSKGISTAYITSELDLNTIGKILDDCQNNKIKLLYVSPERLQSRL
FIERLKQIKISLLAVDEAHCVSEWGHDFRPAYHRISRLKTILPKVPILALTATATEKIQH
EIIQKLELENPAVFNSSLKRENLSYNVVLSSDKKKDLIYYLKKYPGPSIIFVRNRKLTYE
ISNFLSQNGFDTDYFHAKLTKDEKEQKQQDWTLSNTRIMVSTNAFGMGIDKPNVRTVFHI
DLPQGIEAYYQEVGRAGRDEQEASGIYLYNPDDRIQAENIFKANLPSQQDFIKISNCLFS
QLQLAEGELTEMNYQLDIPKFVEKFGLNLKMVLQFLEFLNTKEIIQQKNYSQNSTIQILV
SPHTINLNENKIFDYLQRHYPGIYTYNKEISESKMAFDLHMSISDIRNSLHDYHKNGTIN
YSDRFLARFRFLVPRDSTAFKTKLWKDFESIQVNNWKRLQAMAYYAEQNTICRERLLFGY
FNQKSDENCGKCDVCQAKTHSKNFNSNDLIDYLKEGSKTQAEILSKFINSPKDKIVEELQ
YLIDEMRVQPIGFDSYKLIE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
ttgacacctaaagaaattcttttcagctattggaattatccttcattcaaaacacctcaa
gaggaaatcatctcaagtgttttaaatggaaaagatactttggctattttgccaaccggt
ggaggtaaatctctttgttatcagattccttccatcatcttcgaaggattaactttggtc
atttcacctctaattgcgttgatgaaagatcaagtgcagaatttacaatccaaaggaatc
tccacagcatatattaccagcgaattagatttgaatacaatcggaaaaattttagatgat
tgtcaaaataataaaataaaattactgtatgtttcaccagaacggttacaaagcagactt
tttatcgaacgcctgaaacaaataaaaattagtttacttgcagtggatgaggcacattgt
gtttctgaatggggacacgatttccgtcctgcttatcatcgaatttccagattaaaaacc
attctaccaaaagttccgattttagcgttgacagcaacagcgacagaaaaaattcaacat
gaaataattcaaaaacttgaacttgaaaatccggcagtttttaattcttctttaaaaaga
gaaaatctttcatacaatgttgttctctcttcagataagaaaaaggatttgatttattat
ttaaaaaaatatccgggcccgagtattatttttgttcgaaatagaaaattaacttatgaa
atttcaaactttctaagccaaaatggttttgatacagattattttcacgccaagctaacc
aaagacgaaaaagaacagaaacagcaagattggactttgagcaatacacgcattatggtc
tcgacgaatgcatttggaatgggaatcgataaacccaatgtgcgtactgtttttcatatc
gatttgccacaagggatcgaagcatattatcaggaagttggacgagcaggacgagatgaa
caggaagcttcaggtatctatctttacaatcctgatgatcggattcaggcagaaaatatt
tttaaagcgaacttgccctctcaacaggattttatcaagatatccaattgtttatttagt
caactccaactcgccgaaggcgaactgactgaaatgaattatcaattggatattccaaaa
tttgttgaaaaatttgggttaaacttaaaaatggttcttcaatttttagaatttctgaat
acaaaagaaattattcagcaaaagaattattcacaaaacagtacgattcaaattttagtc
tcaccacatacgattaatttgaacgaaaataaaattttcgattatttacaacgccattat
ccaggaatttatacctacaataaagagatttctgaaagtaaaatggctttcgatttacat
atgagtataagtgatattcgaaattcgttgcacgactatcacaaaaatggaacaattaat
tattcggatcgatttttagcacgatttagatttcttgtaccaagagattcaactgctttc
aaaactaaattgtggaaagattttgaatccattcaagtcaacaattggaaacgtttgcaa
gctatggcttattatgctgaacaaaataccatctgcagagaacgtttattgtttggctat
tttaatcaaaaatcagacgaaaattgtggaaaatgtgacgtttgccaagcaaaaacacat
tcaaaaaacttcaattcaaatgatttaattgattatttgaaagaaggttcaaaaacgcaa
gctgaaatcctttcaaaattcataaattcgccaaaagataaaatcgtcgaagaattacaa
tatttaatcgacgaaatgcgggttcaaccaattggattcgattcttataaactaatagaa
taa
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