Empedobacter brevis: F0358_16825
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Entry
F0358_16825 CDS
T06196
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ebv
Empedobacter brevis
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ebv03009
]
F0358_16825 (rlmD)
Enzymes [BR:
ebv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F0358_16825 (rlmD)
Ribosome biogenesis [BR:
ebv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F0358_16825 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
N6_N4_Mtase
FtsJ
PrmA
Motif
Other DBs
NCBI-ProteinID:
QES94262
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All DBs
Position
3544587..3546005
Genome browser
AA seq
472 aa
AA seq
DB search
MSRKAKQKIILNNIEVLRAGAKGVSVGKTEEGKTVLIKGAIPGDVVDVHVLKKKSSYLEG
QAIEIHTKSPYRVQPECEHFGVCGGCKWQDMSYDAQLKFKHDEVVNNLVRIGGFKDLAAE
IIPILGSKEQYFYRNKLEFTFSNARWLTLEEIQSGKEFDDRDVVGFHIPGAWSKVLDVTK
CHLQRDPSNAIRVEAKRYALEHNLDFFDLKNQEGLLRTLMIRTSQNGQVMVLVQFYREET
ENREGFLQNLKNKFPEITSLLYAINPKQNDSVYDLDIQVFAGEDHIMEKMEDLNFKIGPK
SFYQTNPEQAYELYKLTRDFAGLTGNELVYDLYTGTGTIAQFVSKKAKKVVGVESVQEAI
DAAKAAAKFNGIDNCDFYCGDMKDVLNQDFINQHGIPDVIITDPPRDGMHKKVVENILFM
NPKRIVYVSCNSATQARDLELMKEHYKIVKVQPVDMFPQTHHVENIVLLERI
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaaagcaaagcaaaaaatcatattaaataatatagaagttttacgtgctggt
gcaaaaggtgtatcggtaggtaaaacagaagaaggtaaaacagttctaataaaaggtgct
atcccaggagacgtggtagatgtacatgttttgaaaaagaaaagcagttatttagaaggg
caggcaattgaaattcatacgaaatctccttaccgtgttcaaccggaatgtgaacatttt
ggagtttgtggtggttgtaaatggcaagacatgagttatgatgcacaactaaaatttaag
cacgatgaagtggttaataatttagttcgaattggaggcttcaaagacttagcagcagaa
ataattcctattttaggttcgaaagagcagtatttttaccgcaataaattagaattcact
ttttctaatgcgcgttggttaacattagaagaaattcaatccggaaaagaatttgatgac
cgcgatgttgttggattccacatccccggggcttggtctaaagttttggatgttactaaa
tgtcacctacagcgcgacccttcaaatgcgattcgtgttgaagcaaaacgttatgcatta
gaacacaatcttgatttcttcgatttaaaaaatcaagaaggattgttgagaacattaatg
atcagaacttctcaaaacgggcaagtaatggttttggtacaattttacagagaagagaca
gaaaaccgtgaaggattcttacaaaacttaaagaataaatttccagaaatcacgtcatta
ttatatgctatcaatccgaaacaaaatgattccgtttatgatttagacattcaggttttt
gccggagaagatcatattatggaaaagatggaagatttgaactttaaaatcggaccaaaa
tctttttatcaaaccaatccggaacaggcctatgaattatataaattaacacgtgatttt
gcaggtttaaccggaaacgagttagtatatgatttatatacaggaaccggaactattgcg
caattcgtttcgaaaaaagcaaaaaaagtagttggagtagaatctgttcaagaagcaatt
gatgcggcaaaagcagctgcaaaattcaatggaattgataattgcgatttctattgtggt
gatatgaaagatgttttaaaccaagactttatcaaccaacatggaattccagatgtcatc
atcacagatcctcctcgtgatggaatgcataaaaaagtagttgaaaatattttattcatg
aatccaaaacgtatcgtttatgtatcttgtaattctgcaacacaagcgcgcgatttagaa
ctgatgaaagaacactataaaattgttaaagttcaaccggttgatatgtttccacaaaca
catcatgtagaaaatattgtacttttagaacgaatttaa
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