Ectothiorhodospiraceae bacterium BW-2: D5085_00160
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Entry
D5085_00160 CDS
T11052
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Pathway
ebx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5085_00160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebx03019
]
D5085_00160
Enzymes [BR:
ebx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D5085_00160
Messenger RNA biogenesis [BR:
ebx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D5085_00160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
QEP41694
LinkDB
All DBs
Position
38536..39861
Genome browser
AA seq
441 aa
AA seq
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MPFTSLGLCKPLLRAIEEKGYHTPSPIQAQGIPAVLQGHDIMAAAQTGTGKTASFTLPLL
QQLAAGQNAAPYQVRALILTPTRELAAQVAASVQEYGKYLSLSSSVVFGGVKINPQMAQL
RQGVDILIATPGRLLDLFQQKAVKFESLEVLILDEADRMLDMGFIHDIKKILALLPKKRQ
NLLFSATFSGEIRTLAKGLLNHPVEISVSPNNSAANTVKQRVFEVDKSHKTALLSHLIRD
NLWQQVLVFTRTKHGANRLAQRLERDSIGAVAIHGNKSQGARTRALAEFKSGKVRVLVAT
DIAARGIDIIELPHVINFELPNVPEDYVHRIGRTGRAGSEGEAISLVSADEVKLLSAIEK
VIKQTLVREQEPGFVPIHSVPLTKFAPPIPKPKPAQTKSVPKSRVSTMGGNLKQPPAKPS
LRRGRDSSAPPQRQRNKPIRP
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgccatttacttccttaggtctttgcaaaccgctactgcgtgccattgaagagaaggga
tatcacaccccttcacccattcaggcacaggggatccctgctgtgcttcagggccacgat
attatggctgcggcgcaaaccggcaccggtaagacagctagttttaccttgccactactg
caacaactagcagcaggccaaaacgcggccccctatcaagttcgtgccttaatactcacc
ccaacccgcgagctcgctgcccaagtcgcggcgagtgttcaggagtacggtaaatatctg
tcactcagctccagtgttgtctttggcggcgtaaagatcaatccccaaatggcacaactg
cggcagggggtggatattttaatcgccacaccaggacgcctactcgatctctttcaacaa
aaggcggtcaagtttgagtcgttagaggtgctgattctcgatgaagctgatcgaatgctc
gacatggggtttattcacgatattaaaaaaatattggcgctactacctaaaaagcgacaa
aacctgctcttttcggccaccttctccggcgagatccgcaccctagctaaagggctactc
aaccatcctgtcgaaatctcagtctcgcctaataacagcgcggccaacactgttaaacag
cgggtgttcgaagtggataagagccataaaaccgccctgctaagccatctgataagggac
aatctgtggcaacaggtactggtctttacccgaactaagcatggggctaaccggttggct
cagcggctagagcgagatagtatcggcgcggtggcgatccacggtaacaaaagccaaggg
gcgagaacccgagcgctagcagagtttaagtcgggcaaagttagagtgttggtggctacc
gatattgcggcgcgaggcatcgatatcatcgaactgccccatgtgatcaattttgaacta
cccaatgttccagaggattatgtgcatcgtatcggtaggacagggcgtgcgggcagtgag
ggagaggcaatatcgttagttagcgcagatgaggtcaaactgctatctgccatcgaaaaa
gtgattaaacagacgctagtccgcgaacaggaaccgggatttgtgccgatacactcagtg
ccgctgacaaaatttgccccaccgattccaaaaccaaaaccggcacagacaaagtcggtt
cctaaaagcagagtgagcaccatgggaggcaaccttaaacagccgcccgctaagccctcg
ctaagaagaggtagagatagcagtgcgccgccacagcgacaacgcaataaaccgattcga
ccataa
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