Ectothiorhodospiraceae bacterium BW-2: D5085_00315
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Entry
D5085_00315 CDS
T11052
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ebx03016
]
D5085_00315
Enzymes [BR:
ebx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D5085_00315
Transfer RNA biogenesis [BR:
ebx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D5085_00315
Prokaryotic type
tRNA splicing ligases
D5085_00315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QEP41723
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All DBs
Position
68413..69633
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AA seq
406 aa
AA seq
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MRLIDSAQGVPIHAWIDGVDLDPKAEQQLLNSAQVPVIHPHIAVMPDCHWGMGATVGSVI
PTRKAIIPAAVGVDIGCGMAAVKTSLTANDLPDSLRGIRKMVEQAVPHGRSGHGKKQHDK
GAWKELPNRVANLWRSQLQQGFEMLTDQYPVLEQANHVHHLGTLGTGNHFIEVCLDESQQ
VWVMLHSGSRGIGNRIATIFIERAKQDMGDQLGQLPDKDLAYIKEGSPHFDDYMEALLWA
QHYARVNRQIMLENTLAGMAKVRDLPPFKADLMAVNCHHNYVSREHHFGEELYITRKGAV
SAGKGEWGIIPGSMGAKSYIVRGKGNPDSFCSCSHGAGRIMSRTEAKRRFTLDDQIKATE
GVECRKDSSVIDEIPMAYKDIDAVMAAQMDLVEVVHTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttattgactcagcacagggagtccccattcacgcctggattgatggggtcgat
ttagatccaaaagccgagcagcagcttctcaatagcgctcaggtgccggtgattcacccc
catatcgcggtcatgccagattgccactggggtatgggagctacggtcggtagcgtaatt
ccaacacgaaaggccatcattcctgctgccgtaggtgtcgatatcggttgtggtatggcg
gcggttaaaacatcactgaccgccaatgacctgcccgattcactgcgtggtattcgaaaa
atggtggaacaggctgtaccgcatggacgcagtggccatggtaaaaaacagcatgataaa
ggcgcatggaaagagttacctaaccgggtagctaacctttggcgcagtcagttgcagcag
ggatttgaaatgttaacggatcaatatccggttctggaacaagccaatcatgtgcatcac
ctcggcacactaggcaccggcaaccactttattgaagtctgcctcgatgagagtcagcag
gtatgggtcatgctccactccggctcgcggggcattggtaatcgcattgccaccatattc
attgagcgggctaaacaggatatgggggatcagctagggcagctgcctgataaagatttg
gcctacattaaagagggttctccccattttgatgattacatggaagcactattatgggca
caacactatgcgcgggtaaaccggcagatcatgctggaaaataccttagccggaatggct
aaagttcgtgatttacccccttttaaggcggatctgatggcggtcaattgtcatcacaac
tatgtcagccgggagcaccactttggtgaagagctctacatcactcgtaaaggtgccgtc
agtgcaggaaaaggggaatggggaattattccaggctcaatgggagctaaaagttacatt
gtgcggggtaaaggcaatccggactcgttttgctcctgtagtcatggtgccggtcggata
atgtcacgcactgaggcaaaaagacgctttacgctagatgatcagattaaggccaccgaa
ggggtggagtgccgtaaagatagctcggtcattgatgaaatcccaatggcttacaaagac
attgatgcggtgatggccgcacaaatggatttggtagaagtcgttcacaccctaaagcag
gtagtttgtgtaaaagggtga
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