Ectothiorhodospiraceae bacterium BW-2: D5085_03220
Help
Entry
D5085_03220 CDS
T11052
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Pathway
ebx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D5085_03220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ebx03400
]
D5085_03220
Enzymes [BR:
ebx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D5085_03220
DNA repair and recombination proteins [BR:
ebx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D5085_03220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEP42231
UniProt:
A0A5C2HNE5
LinkDB
All DBs
Position
693880..697338
Genome browser
AA seq
1152 aa
AA seq
DB search
MIDLLSPTVKIATGQRFAWGELYGSAIALTLQRLAQSQQSLLLLVTADSSSALRLERELS
FFNRDSDASVPLLPFPSWETLPYDRFSPHQDIISARLETLYRLPQIQHGVVIIPVSTLMT
RLPPPSFVASHTLLLQRGERVALETMRRELEQHGYRYVNQVMEHGEFTVRGSLLDLFPSG
SQLPYRIELFDDEVDTMRTFDPDTQRSLNQTETIRLLPAREFPIDEAGVATFRHNFRQQF
EGDPQQSLIYREVSCGNMPTGIEYYLPLFFDQSATLFDYLPSETTLCLHGDIEQAAALFA
REYRDRYQLAHYEPERRPLPPEQLFMLPDQLFAAFKSLRRIDVGTFAVPPERHGDNFATR
PLPPLMLNPQLATPSAPLQQFCHDFQGRTLFSAESTGRREILQQMLQQAGLTPTPVEGWQ
AFLNHTSRHCLTVAALDEGFIDTHNQFAFITESQLYGQQVMQRRRRRQTHRHQESVIRNL
AELQLGSAVVHEDHGVGRYRGLKSMELGGTLQEFLQLEYAGGDTLYVPVTALDLIHRYSG
ASAETAPLHKLGSGLWERAKRKAKERVRDVAAELLAIYAKRAAQQGFIYQPAEQEYHKFA
AEFPFEETPDQLDAIEAVISDMALPRPMDRVICGDVGFGKTEVAMRAAFIAVQAGRQVAV
LVPTTLLSEQHLQNFRDRFANWPVNIAALSRFRSGKESRQVVAELASGQLDIVIGTHKLL
QKGIEYHNLGLVIIDEEHRFGVRQKEQFKQLRAEVDLLTLTATPIPRTLNMALGGIRDLS
IIASPPAKRLAVKTFVHDWSDSLIFEACQRELRRGGQIYFIHNEIETIEKISQRLEGLLP
DARIATAHGQMRERDLEQVMSDFYHQRYNLLLCTTIIETGIDIPSANTIIINRADRFGLA
QLYQLRGRVGRSHHRAYAYLLVNNCQSLTKDAQKRLEAIESIEELGTGFTLATHDLEIRG
AGELLGDDQSGQMHEVGFTLYAELLERAVKALQQHGDGGSAEEESESPKIEIELGLPALL
PESYITDVHTRLVLYKRIASQSDQAGLDELQAELIDRFGLLPEPAKRLFTLMQLKQQLYP
LGIRRLEMGEKFGRITFIDHPPFDPIKMIQLLQAEPQRFQLDPQQRLKINQPMPEEAQRL
EVIAQLIRALQT
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatctcctctccccgacggttaagatagccactgggcagcgatttgcttggggc
gagctctacggcagcgccatcgccctcactctacagcgcctagcccaaagccaacagagt
ctgctgctgctagttaccgccgactccagctcggcgctacgcttagagcgggagctgagc
ttctttaaccgcgatagtgacgctagcgtgccgctgctcccctttccgagttgggagact
ctcccctatgatcgcttctcaccccatcaagatattatctctgcccgactcgaaacgctc
taccgtctgccccaaattcagcacggcgtggtcattattccggtctcaacgctaatgacc
cgcctgccgccccccagcttcgtcgcgagccataccctgctgctacagcgaggagagagg
gtagcgcttgagaccatgcgacgagaactagagcagcacggctaccgctatgtcaaccag
gtgatggagcatggcgagtttaccgttcggggtagcctgctcgatctcttccctagcggc
agtcagctcccctaccgtatcgagctgtttgatgatgaggtcgataccatgcgtactttc
gatcccgatacgcagcgatcacttaaccagacagagacgattcgactcctcccggcgcgg
gagtttccgatcgatgaggcgggggtggccacttttcgccacaattttcggcagcagttt
gaaggcgatccacagcagagcctcatctatcgtgaggtaagctgcggcaatatgccgacc
ggaattgagtactatctgccactcttttttgaccagagcgccactctctttgactatctc
ccctcagagaccaccctctgcctccacggcgatatcgagcaggccgcagcgctatttgcc
cgtgaatatcgagatcgctaccagttagcccactatgaaccagagcgccggcccctcccc
cccgaacagctctttatgctgccagatcaactctttgcggcctttaagtcgctgcgtcgt
atcgatgtcggcacctttgccgtcccgccagagcgccacggtgataacttcgctacccgc
ccgctacccccgctaatgctcaatccgcagttagcgaccccctctgcgccactacagcag
ttttgccacgactttcaggggcgcactctctttagtgccgaatcgaccggtcggcgtgag
atcttacagcagatgttacagcaagcggggctcacccccactcccgtcgaggggtggcag
gcgtttttaaaccacaccagtcgccactgcctaacggtcgccgccctcgatgaggggttt
atcgatacccataaccagtttgcgttcattaccgaaagccagctctacggccagcaggtg
atgcagcgccgacgccgacgccagacccatcgtcatcaagagagtgtgattcgcaatctc
gccgaactacagctcggttcggccgtggtgcatgaagatcacggtgtggggcgctatcga
ggcctaaagagcatggagctcggaggcaccctgcaggagtttttacagcttgagtatgct
ggcggcgatacgctctacgtaccggtaacggcgctggatctgattcaccgctacagcggc
gcctcagccgagaccgccccgctgcacaagctcggcagcggtctttgggaacgggctaaa
cgaaaggcgaaagagagggtgcgcgatgtggccgccgagctgctagccatctatgctaaa
cgggcggcacaacagggatttatctatcaaccggccgagcaggagtaccacaaatttgcc
gctgagtttccgtttgaggagacccccgatcagctcgacgcgatcgaggcggtcatcagc
gatatggctcttccccgaccgatggatagagtgatctgtggcgatgtcggcttcggcaaa
accgaagtggcgatgcgagccgcctttatcgcggttcaggcgggacgacaggtagcggtg
ctggttccgactacactgctgtcggagcagcatctgcaaaattttcgggatcgctttgcc
aactggccagtcaatatcgccgccctctcccgttttcgttcgggcaaagagagccgccag
gtggtggcagagctagcctctggtcagctcgatatcgttatcggcacccataaattactc
caaaaggggattgagtatcacaacttagggctagtgattatcgatgaggagcaccgtttc
ggcgtcagacagaaggagcagtttaaacagctacgggccgaggtcgatctcttaaccctc
accgcgacccccatcccccgtaccctcaatatggcactaggcggcattcgcgacctatcg
attatcgcctccccgccggcaaagcggctagcggtcaaaacctttgtccacgactggagt
gatagcctcatctttgaggcgtgccagcgagagctgcgtcggggcggtcagatctacttc
atccataatgagatcgagacgattgagaagatctcccaacgcctagagggactactcccc
gatgcccgcattgcgacagctcacggccagatgcgcgaacgcgatctagagcaggtaatg
tccgacttctaccaccagcgctacaatctactgctctgcactactattatcgagaccggt
atcgatatccccagcgccaataccattattattaaccgcgccgatcgcttcggcctcgcc
caactctaccagctacgaggacgggtcgggcgttcgcaccaccgcgcctacgcctacctt
ttggtcaataactgtcaaagcctgacaaaggatgcccaaaaacggctagaggcgattgag
tcgattgaggagctaggcaccggctttaccctagcgactcacgatctcgaaattcgcggt
gccggtgagctgttaggcgatgatcagagtggccagatgcatgaggtcggttttaccctc
tatgccgaactgctagagcgggcagtcaaggcgctacagcagcatggcgatggcgggagc
gcggaggaggagagcgagagccctaagatcgagatcgagctagggttaccggcgctgcta
cctgagagctacatcaccgatgtccatacccgactcgttctctataaacggatcgccagc
cagagcgatcaggccggtctcgatgagctacaggcggagttaatcgaccgttttgggctg
ctcccagagcctgccaaacgcctctttaccctaatgcagctaaaacagcagctctatcca
ctcggcattcgtcgccttgagatgggcgaaaaatttggccgcatcacctttatcgaccac
cccccctttgatccgataaaaatgattcaactgctgcaggcagagccgcagcgatttcag
ctcgatccacagcagcggcttaaaatcaaccaaccgatgcctgaagaggctcagcggcta
gaggttattgcccaactcatacgggcattgcaaacttaa
DBGET
integrated database retrieval system
