Ectothiorhodospiraceae bacterium BW-2: D5085_05355
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Entry
D5085_05355 CDS
T11052
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Pathway
ebx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5085_05355 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebx03021
]
D5085_05355 (rpoC)
03400 DNA repair and recombination proteins [BR:
ebx03400
]
D5085_05355 (rpoC)
Enzymes [BR:
ebx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5085_05355 (rpoC)
Transcription machinery [BR:
ebx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5085_05355 (rpoC)
DNA repair and recombination proteins [BR:
ebx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5085_05355 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
C3_CUB1
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-ProteinID:
QEP42611
LinkDB
All DBs
Position
complement(1117615..1121844)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLIKQQGHLEDFNAIRIGLASPDKVRSWSYGEVKKPETINYRTFRPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELACPVAHIWFLKSL
PSRMGLLLDMPLRDIERVLYFEAFVVTEPGMTKLERGKLLTEEAHIEAFEEYGDEFEAKM
GAEAIYAMLKEMDLQVEAARLRDEIPNTNSETKLKKLTKRLKLIEAFLESGNKPEWMVMT
VLPVLPPELRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLERRGLATTIKAAKKLVERESPEVWDILDEVIRQHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTRDRVNARGEGMAFADIKEAIRAYENR
AVELHAQVKVRIVEQLYNDQGELEEHRSLRDTTVGRSMLFEIIPPGMPFEIVNKPMVKKA
ISALINYAYRHLGLKESVIFADQLMYLGFRMATRAGVSFGAKDMVVPSSKADILAQADEE
VKEIESQYISGLVTNGERYNKVVDIWSRTNDQVAKAMMDGLGKEEVLDREGNSVKQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFLEGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVIVETDCQTTQGLEMQALIEGGDVVELLEDRVL
GRVVADDVISNTSGEVLIPRGTLLDEQWVQQIESMSIDTIKVRSPITCETRYGVCSACYG
RDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNIQNKKAGSVRL
HNNKSVTHKDGYSVAVSRSGELAIIDDQGREIERYKVPYGARINATEGQGVEAGTILANW
DPHTHPVITEIDGRVQLFEFEEGITVNRQIDEITGLTSLVVLDPKQRGQAGKDKRPMVKL
VDESGHDLNIPGTDLPAQYFLPSGAIVSLSDGDQVSVGDVLARIPQESSKTRDITGGLPR
VADLFEARKPKESSILAEVSGTVSFGKETKGKQRLVITPPEGEHYEELIPKWRHINVFEG
EHVGKGEVIVDGELNPHDILRLQGIVELARYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RKCEIMEGGDTPFLKGEQVEYAAVLDENEKAQLNNKMPARYERLLLGITKASLATESFIS
AASFQETTRVLTDAAVTGKRDDLRGLKENVIVGRLIPAGTGLAYHSERKKRFEDVFNDEM
DAANRANATLEARRESQRESLLKAPTSES
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacctactcaatttgataaaacagcagggccatttagaggattttaacgccatt
cgtatcggcttagcctcccccgataaggttcgctcttggtcttatggcgaggtgaagaag
ccggagacgattaactatcggacttttcgtcccgaacgagatgggctattttgtgccaag
atttttggtccggtcaaagattatgagtgtctgtgtggtaagtataagcgcttaaaacat
cggggggtgatctgtgaaaagtgtggcgttgaggtcaccctctccaaagttcgacgggag
cgcatgggccatattgagctagcctgtccggtcgcgcatatctggtttttaaagagcctc
ccctctcgcatggggctgctgctcgatatgccgctacgagatatcgaacgggtgctctac
tttgaagcttttgtcgtgaccgagccggggatgaccaagctagagcgggggaagttgctg
accgaagaggcgcacattgaggcgtttgaagagtatggggatgagtttgaggccaaaatg
ggggctgaggcgatctacgctatgctcaaggagatggatctacaggtcgaggcggccaga
ttgcgcgatgagatccccaataccaactctgaaaccaagctgaagaagctgactaagcgg
ctgaagctaattgaggcctttttagagtcggggaacaaaccggagtggatggtgatgaca
gtgctaccggtactgccaccagagctgcgcccgctagtccccttagagggggggcgtttt
gcgacctctgatttgaatgatctctaccggcgggtgattaaccgtaataaccgtcttaaa
cggctgctagagctcaatgcccccgatattatcgtccgtaacgagaagcggatgctgcaa
gaggcggtcgatgctctgttagataatggtcggcgcggacgggcgattaccggctcaaac
aagcggccgctaaagtcgttagccgatatgatcaagggcaagcagggccgttttcggcaa
aatctactcggaaagagggtggactactctggccggtcggtgatcgtggtagggccgacg
ctgagactgcatcagtgcggtctgccaaagaagatggcgctggagctgtttaagccgttt
atcttcagcaaactggagcggcgtggcctagccaccacgattaaggcggcgaaaaaactg
gttgagcgggagagtccggaggtgtgggatattctggatgaggtgattcgtcagcatcct
gtcatgttgaatcgagcaccgacgctgcaccgtctcggcattcaggcgtttgagccgcag
ctcattgaggggaaagcgattcagctccatccgcttgtctgcgccgcctttaacgccgac
ttcgatggtgaccagatggcagtgcatgtgcccctctcactagaggcccagctcgaagct
cgtagtctgatgatgtcaaccaataatgtcctctctcctgccaatggtgatccgattatt
gtgccgtcacaagatgtggtactcgggctctactacatgactcgcgatagagtcaatgct
cgtggggaggggatggcttttgccgatattaaagaggcgattcgcgcctacgaaaatcgc
gcagttgagctccatgcccaagtcaaagtgcgtattgttgagcagctctataatgaccaa
ggtgagctagaggagcatcgctcccttcgcgataccaccgtcggccgctccatgctgttt
gagattataccgccggggatgccgtttgagattgtgaataaaccgatggttaaaaaggca
atttcggcgctaattaactacgcctatcgccatttaggtctaaaagagtcggttattttt
gccgatcaacttatgtatctgggctttaggatggcgactcgtgctggggtgtcatttggg
gctaaggatatggtggtgccctcatcaaaagccgatattttggctcaggccgatgaggag
gtgaaagagatcgagtcacaatatatttcgggtctggtgactaacggcgaacgctataac
aaggtggtcgatatctggtctcggactaatgatcaggtcgctaaggcgatgatggatggt
ctaggtaaagaggaggtacttgatcgggaggggaatagcgtcaaacaggactcatttaac
tctatcttcatgatggctgactctggtgcccgagggagtgcggcacagatacggcagtta
gccggtatgcgggggctgatggctaagccggatggttcgattatcgagacgccgattacc
gctaacttcctcgaagggctatcggtattgcagtactttatttcgactcatggcgcccgt
aaaggtctggctgatactgcgttaaaaacggctaactccggttatctgactcgacgactg
gtcgatgtggcgcaagatctagttattgtcgagaccgattgtcaaacgactcaggggtta
gagatgcaggccctcattgaggggggagatgtggtcgaactgctcgaagatcgggtacta
ggacgggtggtcgccgatgatgtgatctctaatacgagcggcgaagtgctaattccacgc
ggtaccctactcgatgagcagtgggtgcaacagatagagtcgatgtcgatcgatactatc
aaagttcgctcaccgattacctgtgagacccgttacggggtctgctctgcctgttatggc
cgtgatctggctcgggggcaccaagtgaatgtgggtgaggcagtgggggtcattgcggca
cagtcgattggcgagccggggacacagctaaccatgcgtactttccatatcggtggggca
gcctcccgctcggcggcgattagtaatattcagaacaaaaaagcgggaagtgtgcggctg
cacaataacaagtcggttacccacaaagatggctactcggtggcggtatcgcgctcaggg
gagttggcgattattgatgatcaggggcgagagatcgaacgctacaaagtcccctatggc
gcacgcattaacgccaccgaggggcagggagttgaggctgggacaatcttagccaattgg
gatccccacacccacccggttattaccgaaatcgatggtcgggtacagctatttgagttt
gaagaggggattactgtcaaccgtcagatcgatgagattactgggctgacttcgctagtg
gtactcgatccgaaacagcgtggtcaggccggtaaagataagcggccgatggttaaactg
gtcgatgagtcggggcatgatctcaatattcccgggactgatctgccggcacaatacttc
ctcccctctggggcgattgtatcactctctgatggtgatcaggtcagtgtgggggatgtg
ttggcccgtattccgcaggagtcctctaaaacccgtgatattaccgggggtctgccgcga
gtggccgatctatttgaggctagaaagccgaaagagtcctccattttggccgaagttagc
ggtaccgtctcgtttggtaaggagactaaggggaaacagcgactggtgataaccccgcca
gagggggagcactacgaggagttgatccctaaatggcgacacattaatgtgtttgagggg
gagcatgtcggcaagggggaggtcattgtcgatggcgaactcaatccgcacgatattctg
cgactacagggaattgtagagctagcccgctatatcgttaatgaagtgcaagatgtctat
cgtctgcaaggggtaaagattaacgataagcatattgaagttattgtgcggcagatgctg
cgcaagtgtgaaattatggagggcggtgatacgccgttccttaagggagagcaggtcgaa
tacgccgctgtgcttgatgagaacgaaaaggcgcagctaaataacaaaatgccagcccgt
tatgagaggctactgctcgggattactaaggcgtcactcgctaccgagtcgtttatctct
gccgcctcattccaagagacaactcgtgtcttaaccgatgcggcggtgaccggtaaacga
gacgatctacggggcctaaaagagaatgtgattgtgggccgattaattccagccggtacc
ggtctagcctaccactcggagcggaaaaaacggttcgaagatgtctttaatgacgagatg
gacgcggctaatagagccaacgccactcttgaagctaggagggagtcgcagcgagagagc
cttctgaaggcaccgactagtgagtcgtga
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integrated database retrieval system
