Ectothiorhodospiraceae bacterium BW-2: D5085_06585
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Entry
D5085_06585 CDS
T11052
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Pathway
ebx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D5085_06585 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebx03021
]
D5085_06585 (rpoD)
Transcription machinery [BR:
ebx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D5085_06585 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YceD
Motif
Other DBs
NCBI-ProteinID:
QEP42823
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Position
1375610..1377442
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AA seq
610 aa
AA seq
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MLEQQTSQIKLLIARGKEQGYLTYSEVNDHLPGDIVEPEQIEDIIGMINDMGITVHEVAP
DADSLILADNSVNDDDDAAEEAAAALAAVDSEFGRTTDPVRMYMREMGAVELLTREGEIA
IAKRIEEGTRQVHIALSSQPICIAELIKLYQTLEPGDNKVLDLISGFTTLQLEEEAIEES
DSEESSNDKKGALEVEEDDDSAIKEAALDLHEVHQKMVALEAIYSRLMEECKKSAVSGQR
PEAMLRQLSEQFLELKLTPRVIDTLINLVRTNINNIRTVERKIMAICVNQGGMRKQHFVN
AFTNNETNLDWFDALLAANETYRTRLEPQRDNIVMLQEKLRGMEKNCGMTINHVKEINRQ
MSIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA
VRMDIPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNNALSPIDAATIEGLKEST
QLVLEGLTARESKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRA
EHLRTFLDQD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgctggaacaacagacctcccaaatcaagcttcttattgcccgcggcaaagagcagggc
tatctcacctactctgaagttaacgatcacctccccggtgatatcgttgaaccggaacag
attgaagatattatcggcatgattaacgacatgggcattactgtccatgaggtcgccccc
gatgctgacagcctgattctggccgacaactcggttaacgatgacgacgacgcagcagaa
gaggctgccgccgccctcgccgccgttgacagcgagttcggtcgcaccaccgatccggta
cgaatgtatatgcgtgaaatgggcgccgttgaactattgacccgtgaaggggagatagcc
atcgctaagcgcatcgaagaggggactcgccaagtccatatcgccctcagcagccaacct
atctgtattgctgaactgattaagctctaccagacactcgaaccgggagataacaaggta
ctcgatctcatctccggttttaccaccttgcaactagaggaggaggcaatcgaagagagc
gactcagaagagagtagcaacgacaaaaagggagcgcttgaggtcgaagaggatgacgat
agcgctatcaaagaggcggctctcgatctacatgaagtgcaccaaaagatggtcgcgcta
gaggctatctatagccgcctcatggaggagtgcaaaaagagtgccgtcagcggccaacga
ccagaagcgatgctgcgccaactgagtgagcagtttctggagctaaaactcactccccgc
gtgatcgataccctgattaacctagttcgcaccaacattaacaatatccgcaccgtagag
cgcaagattatggccatttgcgtcaatcagggcggtatgcgcaaacagcactttgtcaac
gcctttaccaacaacgagaccaacctcgactggttcgatgccctgttagcggcaaatgag
acctatcgcactcgtctcgaaccgcagcgcgacaatatcgttatgctacaagagaagctg
cgcggtatggagaagaactgcggcatgaccattaaccatgttaaagagattaaccgtcag
atgtcgataggtgaggcgaaggcgcggcgagctaaaaaagagatgatcgaagccaatctg
cggctggtgatctcaatcgccaaaaagtacaccaaccgcggactacagtttctcgacctc
attcaggagggtaacatcggcctgatgaaggcggtcgataagtttgagtatcgtcgcggc
tacaaattctccacctacgccacctggtggattcgtcaagcgattacccgctcgattgcc
gatcaggcgcgcaccattcggattccggtccacatgattgagacgattaataaactcaac
cgtatctcccgtcagatgttgcaggagatgggtcgtgaaccgacgccagaggagttggcg
gttagaatggatataccagaggataagattcgcaaggtgctcaaaatcgccaaagagccg
atctcaatggagaccccaataggcgatgatgaagattcacatctaggcgactttatcgag
gataataacgccctctcccccattgatgcggcaacgattgaggggctaaaagagagcacc
caattggtgcttgaggggctaacggccagagagtcaaaggtactgagaatgcgctttggc
atcgatatgaacaccgaccacaccctcgaagaggtcggcaaacagtttgatgtcacccgg
gagcggattcgccaaattgaggccaaagcgctgcgcaaactgcgccatccgagtcgggcg
gagcacctgagaacctttctcgatcaagattag
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