Ectothiorhodospiraceae bacterium BW-2: D5085_09615
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Entry
D5085_09615 CDS
T11052
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Pathway
ebx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5085_09615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebx03021
]
D5085_09615 (rho)
03019 Messenger RNA biogenesis [BR:
ebx03019
]
D5085_09615 (rho)
Transcription machinery [BR:
ebx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D5085_09615 (rho)
Messenger RNA biogenesis [BR:
ebx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D5085_09615 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_22
AAA_25
S1_TP0910
Mor
AAA
Spore_III_AA
G2BR
Motif
Other DBs
NCBI-ProteinID:
QEP45121
LinkDB
All DBs
Position
complement(2030016..2031272)
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AA seq
418 aa
AA seq
DB search
MNLSELKQKSAAELLDIASEMGLENVHRIRKEQVVFALLKAIAKNGEEIFADGVLEILSD
GFGFLRSADSSFLAGPDDVYVSPSQIRRFNLRTGDTVSGKVRSPKDNERYFALVKIDQIN
YEPPENAKRKVHFENLTPLHANQRISLEQGNGSTEDITARVIDLVSPIGLGQRGLIVSPP
KAGKTMVIQNIAHSIANNHPDVYLMVLLIDERPEEVTEMSRQVRGDVISSTFDEPAARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPASGKVLTGGVDANGLQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMELHLDRRIAEKRIYPAIHI
NRSGTRREELLTSADELQKMWILRKLLHPMDELAAMEFLHDKMKVSKSNSEFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctctgaattgaagcagaaatcggctgctgaacttctcgatattgccagtgaa
atgggactggaaaatgtccaccgtattcgtaaggagcaggtggtctttgccctattaaaa
gcgatcgccaaaaacggtgaggagatcttcgctgatggtgtattggagatcctctccgac
ggtttcggctttttacgctccgccgatagctcctttctggctggccccgatgatgtctat
gtctcccctagccagattcgccgcttcaatctccgcaccggagatactgtctcgggcaag
gttcgctcccctaaagataatgagcgctacttcgccctggttaaaatcgaccaaatcaac
tatgaaccccccgaaaatgccaaacgcaaagtccattttgagaacttaacccctctacac
gccaatcagcgcatcagcctagagcagggcaatggcagcaccgaagatatcaccgcccgg
gtcattgatttggtctcacccatcggcttaggccagcgaggacttatcgtctcccccccg
aaagcgggtaaaaccatggtcattcaaaatattgcccactctatcgccaataaccacccc
gatgtctatctgatggtactgctcatcgatgagcgacccgaagaggtaaccgaaatgagt
cggcaggtgcgcggagatgtgatctccagtacctttgatgagccggcggctcgccatgtc
caagtcgccgagatggtgatagagaaagccaaacggctcgttgaacacaaacgcgatgtc
gtgattctgctcgattcgattacccgtcttggccgcgcctacaacaccgtcgtccccgct
tcgggcaaagtgctcaccggcggagtcgatgcgaacggattacaacgcccgaaacgcttc
tttggtgccgcgcgcaatatcgaagaggggggctccctcaccattatcgcaaccgcactc
atcgataccggctcccgtatggacgatgttatctatgaagagtttaagggcaccggtaac
atggagctccaccttgatcgccgaattgccgaaaagcggatctaccccgctatccatatc
aaccgctcaggcacccgtcgcgaagagctgctgacctcggccgatgaactacagaaaatg
tggattttgcgcaaactgctccacccgatggatgagttagcggccatggagtttctgcac
gataagatgaaggttagcaaaagcaacagcgaatttttcgactctatgaagcgttaa
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