Ectothiorhodospiraceae bacterium BW-2: D5085_13825
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Entry
D5085_13825 CDS
T11052
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebx03032
]
D5085_13825 (topA)
03400 DNA repair and recombination proteins [BR:
ebx03400
]
D5085_13825 (topA)
Enzymes [BR:
ebx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D5085_13825 (topA)
DNA replication proteins [BR:
ebx03032
]
Prokaryotic type
DNA Topoisomerases
D5085_13825 (topA)
DNA repair and recombination proteins [BR:
ebx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D5085_13825 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Auto_anti-p27
Zn_ribbon_InsA
DNA_ligase_ZBD
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
QEP44103
UniProt:
A0A5C2HSM9
LinkDB
All DBs
Position
2889346..2891682
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AA seq
778 aa
AA seq
DB search
MGKSLVIVESPAKAKTIKKYLGGDYEVLASYGHIRDLLPKEGAVDPANNFAMKYELIERN
SRHVDAIVKQLRGADQLLLATDPDREGEAISWHLLQYLQSRRGLMKDKPVGRIQFNEITK
RAIQEAVEHPRPIAMALVNAQQARRALDYLVGFNLSPLLWRKIRGGLSAGRVQSPALRLI
VEREEEIERFIPQEYWTIEALVAQQGQPEPEPFKARLIQLEGNKLDQFDLNRAETAHSAE
AKIAAAANGRLQVAKVEKKQRKRNPAPPFTTSTLQQEASRKLGFGAQRTMRIAQQLYEGI
DIGGETVGLITYMRTDSVNLASEAIEELRQFIVSRYGTATLPPQPRLFKTKSKNAQEAHE
AVRPTSAMRTPQQLASHLTKEQLRLYELIWKRTVACQMKSATLNTVAIDLIAQQIATFRA
NGSVVVDPGFMTVYQEGRDDSKNDEGENRILPPLQEGEWVDLVKLLTEQHFTEPPPRFSE
ATLVKTLEEYGIGRPSTYASIISTLQQRDYVEMDKKRFIPTDVGRTVNRFLTEHFTRYVD
YEFTARLEDELDAISRGEEEWIPLLHRFWQPFHTLVEDKDQSVSRKDVTEERLEESCPEC
GQYLVKKLGKRGRFIGCSGYPDCSYTRNLDGESSQERAEPELVEGRNCPKCNSPLVYRIG
RYGKFIGCSGYPQCRHIESLEQPQDTGVECPKCHKGTLQQRKSRRGKLFYSCATYPACDY
ATWDLPLAEPCPECGWPILTLKVTKRRGEERVCPQKECGYRVAVAGSGETTASAEQEQ
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagagtctggtcattgttgaatcgccggcgaaggcaaaaacgatcaaaaaatat
ctagggggtgactatgaagtactcgcctcttatggccatattcgcgatctactccctaaa
gagggggcggtcgatccggctaacaattttgcgatgaagtatgagttaattgagcgtaac
agtcgccatgttgatgccattgttaagcagctacgcggtgccgatcagctcctgctagcg
accgaccccgatcgcgaaggggaggcgatctcatggcacctgttgcaatatctacagagc
cgtcgtggcttaatgaaagataagccggtaggccgaattcaatttaacgaaatcaccaaa
cgggcgattcaagaggcggtagagcacccccgcccgattgcgatggcgctggtcaatgcc
cagcaggcgaggcgagcgctcgactatctggtcggctttaatctgtcgccgctactgtgg
cgtaaaattcgcggtggcctctcggcggggagagtgcagtcaccggcgctgcggttaatt
gtcgaacgagaggaggagatagagcgctttatcccgcaagagtactggacgattgaggcg
ttagtcgcccaacaggggcagccggagccagagccgtttaaggcgcgtttaattcagcta
gagggtaacaagctggatcagtttgatctcaatcgggccgagacggcccacagtgccgag
gcaaaaattgctgccgctgccaatggacggctacaggtagctaaggtcgaaaaaaagcag
cgtaaacgcaaccccgcccccccttttaccacctcaacgctacagcaggaggcgtcacgc
aagctcggttttggcgctcagcgcaccatgcggatcgcccagcagctctatgagggtatc
gatatcggtggcgagacggtagggctgattacctatatgcgtaccgactcggtgaacctc
gctagtgaagcgattgaggagctacgacagtttattgttagccgctatggcaccgccact
ctccccccacagccgcgactttttaaaaccaaatcaaaaaacgcccaagaggcgcacgaa
gcggtacgaccgacctctgcgatgagaacaccacaacagctcgcctcccatctaaccaaa
gagcagctacgactctatgagctgatctggaaacggacggtggcctgccagatgaagtcg
gcgaccctgaataccgtcgctatcgatctgattgcccaacagatcgccacttttcgggcc
aacggttcggtggtagtcgatcccggttttatgaccgtctatcaagaggggcgggacgac
agtaaaaacgatgagggtgagaaccgtattctcccgccactgcaagagggagagtgggtt
gatctagtcaaactattgaccgagcagcactttaccgaaccgcctccgcgcttctctgaa
gcgaccttggttaagacgctggaggagtatggcattgggcgcccctcgacctacgcctcg
attatttcgaccctacagcagcgcgactatgtcgaaatggataaaaagcgctttattccg
accgatgtcgggcgcacggttaaccgctttttaaccgaacactttacccgctatgtcgat
tatgagtttaccgcccgcctagaggatgagctcgacgccatctctcggggggaggaggag
tggattccgttactgcaccgcttctggcagccgtttcatacgctagtcgaggataaagat
cagagcgttagccgcaaagatgtcactgaagagaggctagaggagagttgcccggagtgt
gggcagtatttagtgaaaaagttgggcaaaagggggcgctttatcggttgtagtggctat
cccgattgtagttacacccgtaacctagatggggagtcgagtcaggagcgggccgaaccg
gagctagttgaggggcgaaactgccctaagtgcaactcccccttagtctatcgcatcggc
cgttacggtaaatttatcggctgtagcggctatccgcagtgtcgccatatcgagtcgcta
gagcagccgcaggataccggagtcgagtgtccaaagtgccataaggggacgctacagcag
cgcaaatcgcgtcgggggaagctcttttactcctgcgcgacctaccctgcgtgcgactac
gcaacctgggatctaccactcgccgagccgtgccctgagtgtggctggccgatattgacc
cttaaagtgaccaaacgacgcggtgaggagagggtctgcccgcaaaaagagtgcggttat
cgggtcgcggtggccggtagcggtgagacgaccgccagtgcagagcaagagcaatga
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