Ectothiorhodospiraceae bacterium BW-2: D5085_17360
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Entry
D5085_17360 CDS
T11052
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ebx Ectothiorhodospiraceae bacterium BW-2
Brite
KEGG Orthology (KO) [BR:
ebx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ebx03009
]
D5085_17360 (rlmD)
Enzymes [BR:
ebx01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D5085_17360 (rlmD)
Ribosome biogenesis [BR:
ebx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D5085_17360 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
MTS
TRAM
Methyltransf_11
Cons_hypoth95
TPMT
Methyltransf_12
Methyltransf_23
TRM5-TYW2_MTfase
PrmA
FtsJ
Methyltr_RsmB-F
DOT1
Methyltransf_15
Methyltransf_4
DREV
CMAS
Motif
Other DBs
NCBI-ProteinID:
QEP44748
UniProt:
A0A5C2HP36
LinkDB
All DBs
Position
complement(3705052..3706389)
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AA seq
445 aa
AA seq
DB search
MARKRARQRLQQLDPVRVTIDSLSHDGRGVATVEGKKIFVEDALPQEQVTFRYVESRRSY
DVGRAEAILTASPQRVEPRCSAFGRCGGCVLQHLKPAAQIDFKQQQLLSNLTRIGKVAAV
EVAPPLLGPQWGYRHKARLGVRYVKARERVMIGFRERRSSFIADIDHCPVLHPSVAEQLP
ALAELIGSLDSFDRIAQLEVAVDESQTALVVRHLDPLSERDLQRLTDYAISHSLALYLQP
KGPDSMTPLWPQTVVLKYQLPQFGVSYQFEPSDFTQVNPAINRLMVTQALDWLELQPQQR
VLDLFCGLGNFTLALATQVAEVVGVEGSELLVERARENSALNRLDNVTFYAADLGGDNLA
QQPWWQQRFDKVLLDPSRSGADRVLPHLAAMGVTTLLYVSCNPATLARDAGELVNRFGYR
LQRVGVLDMFPHTAHVESMALFVKV
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcacgaaaacgggctagacagcggctgcagcagctcgatccggtgcgggtgactatc
gactcgctctcgcacgatgggcgcggggtggcgactgtcgaggggaaaaagatctttgtc
gaagatgcgctaccgcaggagcaggtcacttttcgttatgttgagagtcggcgcagttac
gatgtcgggcgggcagaggcgattctcaccgcttcgccacagcgagttgagccgcgctgt
agcgccttcggtcgttgtggcggttgtgtgctacagcaccttaaaccggcagcgcagatc
gactttaaacagcagcagttattgagtaatttaacccgtatcggcaaggtggcggcggtt
gaagtggccccccccctactaggaccgcagtggggctatcgccacaaggcgcgattaggg
gtgcgctatgtgaaggcgcgtgagcgggtgatgataggttttcgggagcggcgcagcagc
tttattgccgacattgaccactgtccggtactccatccatcagttgcagagcagctaccg
gcactggctgagctgatcggctcactcgatagctttgaccgcattgcccagctagaggtg
gcggtcgatgagagccaaacggcgctagtggtgcgccatctcgacccgctctctgagcgc
gatctacagcgtctgaccgactatgccatatcgcactcgttggccctctatctgcaaccg
aaagggccagatagcatgacgccactctggccacaaacggtagtcttaaagtatcagcta
ccccaatttggggtgagctaccagtttgaaccctccgactttacccaagttaacccggcg
attaaccgtttaatggtgacccaggcgctcgactggctagagctgcaaccgcagcagcgg
gtattagatctcttctgtggtctaggtaactttacgctggcgctagcgactcaagtggct
gaggtggtcggagtggaggggagtgagttactggttgagcgggcgagagagaatagcgcc
ctcaatcggctcgataatgtgaccttttacgcggccgatttaggtggcgataatttagcc
cagcagccgtggtggcagcagcgatttgacaaggtgttgctcgatccctcacgcagtggt
gccgatagggtattgccccatttggctgcgatgggggtgacgaccctactctatgtctct
tgtaatccggcgacgctggctagagatgccggtgagttggtgaatcggtttggctatcga
ttgcaacgggttggggtattagatatgtttccccataccgcccatgttgagtcgatggcg
ctgtttgttaaagtttag
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