Pectobacterium atrosepticum SCRI1043: ECA0224
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Entry
ECA0224 CDS
T00186
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ECA0224 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eca03021
]
ECA0224 (rpoC)
03400 DNA repair and recombination proteins [BR:
eca03400
]
ECA0224 (rpoC)
Enzymes [BR:
eca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ECA0224 (rpoC)
Transcription machinery [BR:
eca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ECA0224 (rpoC)
DNA repair and recombination proteins [BR:
eca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ECA0224 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAG73143
UniProt:
Q6DAM9
LinkDB
All DBs
Position
259736..263959
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDVVKVRSVVSCQTDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
NNVKFVMNGNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSDVSGGETVANW
DPHTMPVVTEVSGFIRFADMIDGQTITRQTDDLTGLSSIVVLDSAERTGSGKDLRPALKI
VDAKGQDVLIPGTDMPAQYFLPGKTIVQLEDGVQIGAGDTLARLPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEMSRIKIANRKLEADGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQASEAPV
VPQVSADEASANMAELLNAGFGKRDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccagtaaaagactatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgttagatatgccgctgcgtgatattgagcgtgtgctttat
tttgaatcttatgtcgtggttgaaggtgggatgaccaaccttgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgacgcgaaaatg
ggcgccgaagcgatccaggctctgctgaagaacatggatctggagcaggaatgcgagcag
ctgcgtgaagagctgaccgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
attaagctgctggaagcgttcgtacagtcgggcaacaagccagagtggatgatcctgacc
gttctgcctgtactgccgccagatctgcgtccgttggttccgctggatggcggtcgtttc
gcgacttccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgttggatctggctgcgccggatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgccttgctggataacggccgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttccgttatcaccgttggtccatac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatccttgacgaagtcatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgagccggta
ctgatcgaaggtaaagcgatccaactgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgtacacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtactcacgggtccgaaagaagcagaacgcgtttatcgtgccggt
ctggcctctctgcatgcgcgcgttaaagtgcgtattacggaagagatcaagagtatcgaa
ggcgatgttacgcatcagacgtcgattatcgatacgactatcggtcgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgttctcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgcttaacacctgttaccgcattttgggtctgaagccgacggttatcttc
gctgaccagactatgtataccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggcgaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctataat
aaagtgatcgatatctgggcagcggcgaacgaacgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggtgtggttgagcagcaggtttctttcaac
agcatctttatgatggctgactcgggtgcgcgtggttctgcagcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttccatcatcgagacgccgattacc
gcaaacttccgtgaaggtttgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttacctgactcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaggacgattgtggtacccatgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagagccactgcgtgaacgcgtactg
ggccgtgtaacggctgaagacgtgatcaaacctggtaccgcggatattctggttccacgt
aacacgctgctgaacgagcagtggtgtgacatgttggaagagaactctgttgacgtcgtt
aaagtgcgttcagtggtaagctgccaaaccgactttggcgtgtgcgccaattgctacggt
cgcgatcttgctcgtggtcatatcatcaacaaaggtgaggccatcggggttatcgcggca
cagtccatcggtgaaccgggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
aacaacgtgaagttcgttatgaacggcaacggtaaactggttattacttcacgtaatacc
gaactgaagctgatcgacgaattcggacgtactaaagaaagctataaagtgccttacggt
gcggtgatggcgaaaggtgacggctctgacgttagcggtggcgaaactgtcgcaaactgg
gatccgcacaccatgcctgtggtgaccgaagtgagcggttttatccgttttgctgatatg
attgacggtcagaccattacccgccagaccgatgacctgactggtttgtcttctatcgtg
gttctggatagcgcagagcgtaccggtagtggtaaagatctgcgtccggcactgaaaatc
gttgacgccaagggtcaagatgtactgatcccaggtaccgatatgcctgctcaatacttc
ctgccgggtaaaacgattgttcagttggaagatggagtgcagattggtgccggtgataca
ttggcgcgtctccctcaggaatccagcggtaccaaggatattaccggtggtctgccacgc
gtagccgacctgttcgaagctcgtcgtccgaaagaaccggcgattctggcagagatcagc
ggcatcatttccttcggtaaagaaaccaaaggcaagcgccgtctggtgatttctccgttg
gatggtagcgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagttgtggaacgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggcgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgcctgcaaggcgttaagattaacgataaacacattgaggttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtagtacggagttcttggaaggcgagcaggca
gaaatgtctcgcatcaagattgctaaccgcaagttggaagcggatggcaagatcacggca
acgttcagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatc
tctgcagcatcgttccaggaaaccactcgcgtacttaccgaagctgctgttgctggtaaa
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggtcgtttgatcccagcgggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtcaggcgagtgaagctcctgtc
gtacctcaggtgagtgccgatgaagcttctgctaacatggctgaactgttgaacgcaggt
tttggtaagcgcgacgacgaataa
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integrated database retrieval system
