Pectobacterium atrosepticum SCRI1043: ECA0718
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Entry
ECA0718 CDS
T00186
Symbol
deaD
Name
(GenBank) ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECA0718 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eca03019
]
ECA0718 (deaD)
03009 Ribosome biogenesis [BR:
eca03009
]
ECA0718 (deaD)
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECA0718 (deaD)
Messenger RNA biogenesis [BR:
eca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECA0718 (deaD)
Ribosome biogenesis [BR:
eca03009
]
Prokaryotic type
rRNA helicases
ECA0718 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAG73633
UniProt:
Q6D999
LinkDB
All DBs
Position
787369..789282
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AA seq
637 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAT
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLAIPEVELPNAELLGQRRLAKFAAKVQLQLESSDLDMYRALLTKMQPQEELDIET
LAAALLKMAQGERPLILPPEPAFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRDGD
RPQRRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIEL
PKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGTGGERRDGAAPRRS
FGGGERREGNANGGERRERSVNRDAAPRAPRRRPADA
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaaacctgagttaaaagcgccgcagatgttggtgttg
gccccaacccgtgaactggctgttcaggttgctgaagcctgtagtgattttgccaaacat
atgcacggcgttaacgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggagcacagattgttgttggtactccaggtcgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtactggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctacg
catcaaactgcactgttctctgcaaccatgccagaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccacaggaagttcgcatccaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggttcgtttcctt
gaagctgaagattttgatgcggcgattattttcgttcgtaccaagaatgctacgctggaa
gtggccgaagcgttggagcgtagcggttataacagtgccgcgctaaacggtgacatgaac
caggcgctgcgtgagcaaacgctggagcgcctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtagtcaactac
gatatcccaatggactccgagtcttacgtccaccgtattggtcgtaccggtcgtgctggt
cgtgctggtcgcgcattgctgtttgtagaaaaccgcgagcgtcgcctgctgcgcaacgtt
gaacgcacaatgaagctggcgattcctgaagtggaattgccaaatgcggaattgctgggg
caacgccgtctggctaaatttgctgccaaagtacagctacagctggaaagcagcgacttg
gatatgtaccgcgctctgctgacgaagatgcaaccgcaggaagagctggatatcgaaacg
ctggctgctgcgctgctgaaaatggcgcagggtgaacgtcctctgatcctgccgccggaa
ccggcattccgtcctcgccgcgaattccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgtgaaccccgcgatgctcgcgattcccgtgaaccccgtgacggtgac
cgtccacaacgccgtgagcgtcgtgagtcgggtgaaatggaactgtatcgtatcgaagtg
ggtcgtgatgacggtgttgaagtacgtcacattgttggtgctatcgccaacgaaggtgat
atcagcagccgctacatcggtaacatcaagctgttcgggtctcattcgacgatcgaactg
ccgaaaggtatgccgggcgacctgttatcacactttacccgcacgcgtattctgaacaaa
ccaatgaatatgcaattgctgggtgatgcagtagcacagccagaacgtcgtggcggtggc
cgtcctgctggtgctggtacgggtggtgaacgtcgtgatggcgcagctccacgtcgctct
ttcggcggtggtgaacgccgtgaaggtaacgctaacggcggtgagcgtcgtgaacgctct
gtcaaccgtgatgcggcaccgcgtgctccacgtcgtcgtcctgctgacgcgtaa
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