Pectobacterium atrosepticum SCRI1043: ECA1079
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Entry
ECA1079 CDS
T00186
Symbol
fecI
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ECA1079 (fecI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eca03021
]
ECA1079 (fecI)
Transcription machinery [BR:
eca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ECA1079 (fecI)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_24
TnsD
HTH_7
HAC6_helical
HTH_11
HTH_36
HTH_28
DUF8658
DUF2774
GerE
HTH_Mga
Motif
Other DBs
NCBI-ProteinID:
CAG73990
UniProt:
Q6D895
LinkDB
All DBs
Position
complement(1209126..1209647)
Genome browser
AA seq
173 aa
AA seq
DB search
MSDHATTSAELTFESLYGSHHGWLKHWLTGKLQSSFDADDIAQDTFLRVMNGESLTTIRD
PKSFLCTVAKRVMVDLFRRNALEKAYLDRLAQLPEALAPSPEIQQQQLETLQQVDLMLDG
LNHKARQAFLLSQLDGMAYAEIATRLNVSISSVKKYVAKATEHCLLFRLEHGL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccacgctaccacttctgccgaactgacgtttgaatcactctatggttcgcat
cacggctggctgaagcactggctgacaggcaagctccaatcttcttttgatgccgatgac
attgctcaggacaccttcctgcgtgtgatgaacggcgagtcgctaaccacaatccgcgac
cccaaatctttcctgtgtaccgttgccaaacgcgtgatggtcgatctgtttcgccgcaat
gcgctggaaaaagcctatctggataggctggcgcagttgccggaagcgcttgcgccctcc
ccagagatccagcaacagcagcttgagacgctccagcaggtcgatctcatgctcgatggt
ctgaaccacaaagcgcgacaggcgtttctgctttctcagcttgacggcatggcctacgct
gagatcgccacgcggctgaatgtctccatcagttcagtcaaaaagtacgttgccaaagcc
acagagcattgcctgctatttcgtctggagcacggactgtga
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