Pectobacterium atrosepticum SCRI1043: ECA1109
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Entry
ECA1109 CDS
T00186
Symbol
sbcD
Name
(GenBank) exonuclease subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
eca
Pectobacterium atrosepticum SCRI1043
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eca03400
]
ECA1109 (sbcD)
DNA repair and recombination proteins [BR:
eca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ECA1109 (sbcD)
Archaeal homologous recombinant proteins
ECA1109 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
CAG74019
UniProt:
Q6D866
LinkDB
All DBs
Position
complement(1259267..1260493)
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AA seq
408 aa
AA seq
DB search
MRIIHTADWHLGQYFYTKSRAAEHQAFLHWLIAQVEHHHVDAIIVAGDIFDNGSPPSYAR
EMYYSFVVELQRTGCQLVILGGNHDSVAMLNESRGLLACLNTRVIACASDDPAQQVLLLE
NRQQQPGALLCAIPFLRPRDVLTSKAGQSGDEKQHALQEAITVHYQQCYQLACQKRDELG
LPLPIIATGHLTTIGATASESVRDIYIGTLDAFPAQAFPPADYIALGHIHRAQRVTQSEH
IRYSGSPIPLSFDELGSEKSVCLVSFIPDAPPKIDLLPIPMTQPMQLIKGCLSDIEQQLS
TFQNYQGDKPVWLDIELSTQDYLSDMQKRVQAMTENLPVEVLLLRRTREQRLQAMTRQDK
ETLNELSVHDVFERRLATETEMEDGRQQRVRTLFNQVIDELENSESAK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattatccacaccgccgattggcatttagggcaatatttttataccaaaagtcgc
gctgctgaacatcaggcttttctgcactggcttatcgctcaggtagaacaccaccacgtc
gatgccattatagtcgcaggcgatatttttgataacggttcacctcccagctatgcgcga
gaaatgtattatagcttcgtggtagaactacaacgcacgggctgtcagctcgtcattctc
ggcggcaaccacgattctgtcgcgatgttgaatgagtcccgtggcttgctggcctgcctg
aacacacgcgtgattgcctgcgccagcgacgatccggcacaacaggtgctcctgctggaa
aaccgtcagcagcagcccggtgccctgctctgcgcgattccttttttacgtccgcgtgat
gtgctaaccagcaaagccggacaatccggtgatgaaaaacagcacgcgctacaggaagcc
attaccgtgcactaccagcagtgttaccagttggcttgccaaaagcgcgatgagcttggc
ctaccgctaccgattattgcaaccggtcatctgacgacgattggtgcaaccgcctcggaa
tccgtgcgcgatatctatattggtacgctcgacgctttccctgctcaggcttttccccct
gcggattatatcgccctcgggcatattcaccgcgcacagcgcgtgacccaaagtgaacac
attcgctacagcggctcccccattccgctgagttttgatgaactcggcagcgagaaatcc
gtttgtctggtcagctttatacccgatgcgccaccgaaaatagacctactgcccattccc
atgacccagccgatgcagctgattaaaggctgtctgagtgatattgaacaacagctgtcc
accttccagaactatcagggcgataaacccgtgtggctggatattgaactcagcacgcag
gattatctgagcgacatgcaaaagcgcgttcaggcgatgaccgagaacctgcccgttgag
gtacttctgctgcgccgcacgcgcgaacagcgtttgcaggcgatgacccgacaggacaaa
gaaacgctaaacgaattgagcgtgcatgatgtttttgaacgtcgtctggcaacggagaca
gaaatggaagacggtcgccaacagcgagtgcgcacgctgtttaatcaggttattgatgaa
ttagaaaatagcgagtctgccaaatga
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