Pectobacterium atrosepticum SCRI1043: ECA1789
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Entry
ECA1789 CDS
T00186
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECA1789 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eca03019
]
ECA1789 (rne)
03009 Ribosome biogenesis [BR:
eca03009
]
ECA1789 (rne)
Enzymes [BR:
eca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ECA1789 (rne)
Messenger RNA biogenesis [BR:
eca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ECA1789 (rne)
Ribosome biogenesis [BR:
eca03009
]
Prokaryotic type
rRNA processing factors
ECA1789 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAG74694
UniProt:
Q6D696
LinkDB
All DBs
Position
complement(2034716..2038000)
Genome browser
AA seq
1094 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIETRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEE
TTPPVAKAAPDVAKAAEEAQPGLISRFFSALKGVFASEPAAKAVDSVDEKKVEEEKAGEG
QRSERRNPRRQGNNRRDRGSREQRDDQRRNKRQTEEVVAETRVAENVEKADSEEQPRREP
RAERQRRRQDERRQAPVEEKIQPVADDSDDNTAEQDKPTQVMQRRQRRQLTQKVRVQSET
QQDTLSDNTAPIAEAPELAQSYVKPNDVAVDNNESDNEQNDANRANGENGGMPRRSRRSP
RHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMASGKVWISYPVAQSQQAENQQLEEN
VAAIETPLLPAVVDVAVTAQADTAESNAIENVAITEAVVHEDAVVTATVQSADVIQDSNV
EHVEVSAADEETVVEPITENTAIDDVIAAIAVSAVEEAKAVEVDDTDTTQATEDVQAVEA
VVAEEKQADDIADATEKADVAEPVSSPVVSVVQEVSQPQSIQDEPVAAISAQSVVEEPAS
GVTKAATVVEQPHYKLHATAPMTKAPAPAYNAEPARHSDWVRPDYPFSGKGSAGGHSAVN
QSTAPATKPAPVNE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatattgaaagtccaggtcatgagcagaagaaagcaaat
atctacaaaggtaaaatcactcgtatcgaacccagtcttgaagcggcttttgttgattac
ggcgctgaaaggcatggtttccttcctcttaaagaaatcgcccgcgaatacttcccaagc
aactatgcttcccatggtcgtcctaacattaaagacgtgttacgtgaaggtcaggaagtt
attgttcaggtagataaagaagagcgtggcaacaaaggcgcagcgctgactacctttatc
agcctggctggtagctatctggtcttaatgccgaataaccctcgcgcaggcggcatttca
cgccggatcgaaggtgacgatcgtaccgagcttaaagaagcgctgggatcgttgcaattg
cccgatggcatgggactcattgttcgtactgctggtgtgggtaaatccgctgaagcacta
caatgggatttggctttccgtctgaaacactgggacgcaatcaaaaaagccgctgaaggt
cgctcggcgccattcctgattcatcaagaaagtaacgtgatcgtccgtgctttccgtgac
tatctgcgccaggatattggcgaaatcctgatcgacaacccgaaaattctcgagctggcg
aaagaacatatttctgcgctgggtcgccctgacttcagcagcaaaatcaaattgtacagt
ggtgaaatcccgcttttcagccactatcagatcgaatcgcagattgaatcggctttccaa
cgtgaagtccgcctgccgtccggcggttctatcgttatcgatactaccgaagcgttgacg
gccattgatatcaactccgcccgtgcaacacgcggtggcgacattgaagaaaccgcgttt
aatactaaccttgaagccgcagacgaaattgcgcgccaattacgcctgcgtgaccttggc
ggcctgatcgtcatcgacttcattgatatgaccccggttcgtcaccagcgtgaagttgaa
aaccgcctgcgcgattcagtacgccaagatcgtgcacgtattcagatcggtcggatttcc
cgcttcggtctgctggaaatgtcacgtcagcgtctaagtccttcactgggcgaatccagc
catcacgtttgcccacgctgtaccggcacaggcacgattcgtgacaatgaatcactttcg
ctgtccattcttcgcctgattgaagaagaagcgctgaaagaaaacaccaaagaagttcat
gcgattgttccagtccagattgcatcttatctgctgaacgagaagcgtgatgccgttaac
gccattgagacacgtcagggcggtgtacgcgctatcatcgtgccacacgacggtatgcaa
acaccgcactactctgtggttcgcgtacgcaaaggcgaagaaaaaccgacgctcagctat
ttgttgcctcagcgtttggaaacggaaacacagcaactgcaagacgaacaaacgatcgag
cgtaaacagcctgagcagccagctttagcaacgttcagcatggctgaaatgccagaagaa
accacgccaccggttgccaaagcggctcctgatgtagcaaaagccgcagaagaagctcaa
ccgggtctcattagccgtttcttcagtgccttaaaaggcgtttttgcttctgaaccagct
gcaaaagcagtagatagcgttgacgagaagaaagtagaagaagagaaagccggtgaaggc
cagcgttctgaacgtcggaacccacgccgtcagggtaataaccgccgtgaccgtggctct
cgtgaacagcgtgatgatcagcgccgtaataagcgacaaaccgaagaagtggtcgcggaa
acacgcgttgcagaaaatgtggagaaagccgattcggaagaacaaccgcgccgtgaacca
cgcgctgaacgtcagcgtcgtcgtcaggacgagcgccgtcaagctccggtagaggagaaa
attcagccagtggccgatgattccgatgacaacacagccgagcaggataagcctactcag
gttatgcaacgtcgccaacgtcgtcagttgactcagaaagtacgtgtccagtctgaaact
cagcaggatactttgtctgataacacggcaccgattgctgaagcccctgagctagctcaa
tcttacgtcaagccaaacgatgttgcggtagacaataacgagagcgataacgagcaaaac
gatgcaaatcgtgccaatggcgaaaatggcggtatgccacgtcgctcacgtcgttctcct
cgccatctgcgcgtcagcggccagcgccgtcgtcgctatcgtgatgagcgttacccatcc
cagtcgccgatgcagttggaatttgccgccgcgtcaccggaaatggcatcagggaaagtg
tggatcagctaccctgtcgcacagtcacagcaggctgaaaaccaacagttggaagagaac
gtggcagctatcgaaacaccactgttaccagccgttgtcgacgtcgcagtgacggcacaa
gccgataccgctgaatccaacgcgattgaaaacgttgcgattactgaagcagtcgttcac
gaagatgccgttgtaacagcaacagtacaatctgcggacgtcattcaggacagcaatgta
gagcatgtcgaagtgagtgctgcagacgaagagactgtcgttgagccaatcacagagaac
acggcgatcgatgatgtcatcgctgcgattgctgttagtgcagttgaagaagccaaagcc
gttgaggttgatgatactgatacgacacaggcgaccgaagatgtacaggccgttgaagct
gtcgttgctgaagaaaaacaggcagatgacatcgctgatgcgaccgagaaagctgatgta
gcagaaccggtttctagcccagtggtttccgtagtacaggaagtcagccagccacaaagc
attcaggatgagccagtagctgcaatcagcgcgcagtcggttgtggaagaaccggcatcg
ggcgtaacaaaagcagctaccgttgttgaacagccgcattataagctccatgcaacggca
ccaatgactaaagcgccagccccagcatataacgcggagcctgctcgacacagtgattgg
gtacgcccagactatccgttctcaggaaaaggctcggcaggcggtcattccgcagttaac
caatcaactgcgccagcaaccaagccagcgccagttaacgagtaa
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