Pectobacterium atrosepticum SCRI1043: ECA1821
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Entry
ECA1821 CDS
T00186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECA1821 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eca03400
]
ECA1821 (mfd)
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECA1821 (mfd)
DNA repair and recombination proteins [BR:
eca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECA1821 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAG74725
UniProt:
Q6D666
LinkDB
All DBs
Position
complement(2066956..2070405)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPENYRYSLPPKAGEQRLLGELTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEIQ
QFTNQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPH
SFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRRD
AEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPSNTLIVNTGNIEQSAERFWQDIQ
QRFESRRVDPMRPLLPSDSLWLRVDGLFTELKAWPRVQLRTDMLPEKAANVNLAYLPLPD
LAIQHQQKSPLDALRRFIEQFDGQIIFSVESEGRRETLQELLTRIKLNPKPISTLEQAQG
RGSYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA
PLHKLGGEAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILKETQEGKVDILIGTHKLLQSDVHW
HDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLMVREAILRETLRGGQVYYLYNDVENIEKATQRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDV
NTRLSLYKRIASAKTLAELDELKVELIDRFGLLPDASRHLLQIAALRQQAQVLGIRRIEG
NEKGGFIEFGEQNRVDPSHLIGLLQRDPSTFRLDGPTRLKFMKDLSNRPQRIEFIGSLLG
SMAQHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattaccgttattcgttgccacccaaagcgggcgagcaacgcctgttaggc
gagttaaccggcgcggcctgcgccgttgaatgtgcagagatcattgaacgtcacgctggg
ctggtggtgcttatcgctcccgatatgcaaaacgctttgcgattgcgcgatgagattcag
caatttaccaaccagcacgtcaccacactgcctgactgggaaacgctgccctacgatagc
ttttctccacatcaggaaattatttcgactcgactctccacactctatcaattgcccaac
atgacgcgcggcgtcctgattctgccggtcaatacgctgatgcagcgcgtttgtccgcac
agtttcctgcacggtcatgcgctagtgttgaagaaaggccagcgcctctcgcgcgacaaa
ctgcgttcacagttggagcaggcgggctatcgcagcgtcgatcaggtgatggagcacggc
gaatatgcgacgcgcggcgcattgttggacctattcccaatggggagcgaagagccctat
cgcatcgatttctttgacgatgagatcgacagcctgcgtctgttcgatgtggatacgcaa
cgcacgctgaatgaagtaccgcacattaatctactgcccgcacatgaattcccaaccgat
aagacggcaatcgagctttttcgcagccagtggcgcgaacaattcgaagtccggcgcgat
gctgagcacatttatcagcaggtcagcaagggcgtctggcccgcagggatcgaatactgg
caaccgttattcttcagtgagccgctgccgtcgctgttcagctacttcccgagcaacaca
ctgatcgttaacacgggcaatatcgagcagagcgctgagcgcttctggcaggatattcag
cagcgttttgaaagtcgccgtgtcgatccgatgcgaccgctgctaccatcggactcactc
tggctgcgcgtcgatggtctgttcacggagctgaaagcatggccgcgcgtgcagttaaga
accgatatgctgccggaaaaagccgccaacgtgaacctggcctatctgccgctgccggat
ctggcgattcagcatcagcaaaaatccccgctggatgcattgcgccgttttatcgaacag
ttcgacggtcagatcattttctccgtcgagagcgaaggtcgtcgcgaaacgctgcaagag
ctactgacccgtatcaaactgaaccccaagcctatcagcacattggagcaggcacagggg
cgtggctcttatctgatcatcggtgccagcgaacacggctttattgacactctgcgccag
cgcgccttaatctgcgaaagcgatctgctgggtgaacgcgtcagccgtcgccgtcaggat
agtcgccgcacaattaataccgatacgctgatccgcaatctggcagagctgcgtccagga
cagcccgttgttcacctcgaacacggcgttggccgctatgtcgggctgaccacgctggaa
gccggtggcatcaaagccgaatacctgattttgacctatgcgggtgaagacaaactgtac
gtccccgtttcttcgctacacttaattagccgctacgcgggcggtgccgatgagaatgcg
ccgctgcacaaactgggtggtgaagcatggtcacgcgcacggcaaaaagcggcggaaaga
gtgcgtgatgtcgcagccgagctgctggatatttatgcccagcgtgcagcgaaaagcggt
tttgcctttaagcacgacaaaacacagtaccagttgttctgcgaaagtttccctttcgaa
accacgcccgatcaggcgcaggccatcaacgccgtactgagcgacatgtgccagccgctg
gcgatggatcgtctggtgtgtggtgatgtcggttttggtaaaaccgaagtggcaatgcgc
gccgcgttcttagcggttgaaaaccataagcaggttgccgttctggtgccgacaacgctg
ttggcacagcagcattttgacaacttccgcgatcgctttgccaactggccagtgaagatt
gaaatgatctcccgcttccgcagcgcgcgtgaacaaacccagattctgaaggaaacgcag
gaaggcaaagtcgatattctgattggcacccataaactgctgcagagcgacgtgcactgg
cacgacttagggctgctcattgtagacgaagaacaccgcttcggcgtacgtcacaaagag
cgcatcaaagcgatgcgggcgaatgtcgatatcctgacgctgaccgctacgccaattccg
cgaacgctcaacatggcaatgagcgggatgcgcgatctgtcgattatcgccacacctcca
gcccgccgtctggcggtgaaaacgttcgtgcgcgaatatgacaatctgatggtacgcgaa
gccatcctgcgtgaaactctgcgcggtgggcaagtgtactatctgtataacgacgtcgaa
aatatcgagaaagccacccaacggttggcggaactggtgccggaagcacgcatcgcgatc
ggccacggtcagatgcgcgaacgcgagctggaacgggtgatgaacgatttccatcaccag
cgttttaacgtgctggtgtgtaccactatcatcgaaaccggaatcgatataccgagcgcc
aacaccatcatcattgagcgagccgatcacttcggtctggcacaactgcaccaactgcgt
ggtcgtgtggggcgttcccaccatcaggcttatgcctatctgctgacgccgccacccaaa
gcaatgagcaccgatgcccagaaacgtctggaagcgatcgcctcattagaagacctcggt
gccggctttgcgctagcgacgcacgatctggaaattcgcggcgcgggcgaactgcttgga
gacgatcagagcggacagatgactagcgtcggtttctcgctgtatatggaactgctggaa
agcgctgtagatgccctgaaagcaggacgagagccgtcactggaagatttgatcaacagc
cagactgacgtcgagctacggttgcccgccttgttgcctgacgatttcatccccgacgtc
aatacacgcctgtcgctatacaaacgtattgccagtgcgaaaaccctcgccgaactggat
gagctaaaggttgaactgatcgatcgcttcggtctattacctgatgcaagtcgccatctg
ttgcagattgccgccttgcgccagcaggcgcaagtgttgggtattcgccgtattgaaggg
aacgagaaaggtggatttatcgaattcggcgagcaaaatcgcgtcgacccgtcccacctt
atcggtctattgcagcgcgatccgagcacctttcgtctggatggcccgactcgtctgaaa
tttatgaaggatttgagcaaccgcccacagcgcatcgagtttatcggttcactgctgggg
agcatggcacagcatacgctggcggcatag
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