Pectobacterium atrosepticum SCRI1043: ECA1963
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Entry
ECA1963 CDS
T00186
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eca03016
]
ECA1963 (rnb)
Enzymes [BR:
eca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ECA1963 (rnb)
Transfer RNA biogenesis [BR:
eca03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ECA1963 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CAG74865
UniProt:
Q6D5S7
LinkDB
All DBs
Position
complement(2222766..2224700)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSKTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKDREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKEAIPCRAARDVTD
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEVETT
ERHDGELVREDLTALNFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVDAGSE
LDNIARQRAFTNYLPGFNIPMLPRALSDDICSLRPNERRPVLACRVTIAADGALGDDIHF
FAASIESKAKLAYDNVSDWLENQGEWQPQNEEIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGEVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQTLLTLDGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDIRFNAEIIDVTRGGLRVRLLDNGAVVFIPSSFIHAVRDE
LVCSQEMGTLSVKGEVVYRQGDTLDVIIAEVRLETRGIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctaagacaccg
cgtgttgaaggtgtcgtcaaaggtaccgataagggatttggctttcttgaagctgacgga
caaaaaagctatttcattccgcctccacacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagatcgggaaattgtcgagccagaaacgctgatcgaa
cctttccttacccgatttgttgggcgtatccataaaaaagacgatcgcttatcaattacg
cctgaccacccgctgctgaaagaggcgattccctgccgagccgcgcgtgatgttacagac
gattttcaggaaggcgattgggccgtagctgaaatgcgtcgtcacccgttgaagggcgat
cgtggatttcatgccgagctgacgcagtacatcaccacgggcgatgacccactggtgccg
tggtgggtgacgttgtcacgccacaatttggagcgttctgccccagaagttgaaaccact
gaacgccatgatggcgaactcgtccgtgaagatctgacggcactgaactttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcactgtatgtgcaggacaacggtgatggt
tcactgcaattaacgatcgctatcgccgacccaaccgcctatgtggatgcaggcagcgag
ttggacaacattgcacgccagcgcgccttcaccaactatttgcccggcttcaacatcccg
atgctgccgcgcgcgctgtcggacgatatctgttccctgcgcccgaacgagcgtcgccct
gttctcgcctgccgcgtgacgattgccgctgacggtgcgctgggtgacgatatccacttc
tttgccgcctcgatcgaatccaaagccaaattagcgtatgacaacgtctctgactggttg
gaaaaccaaggcgaatggcagccgcagaacgaagagattgccgaacaaatccgtttgctg
catcgcctctgtctggcacgcagtgaatggcgcaccacacacgcgctggtgtttaaagat
cgcccggattatcgcttcctgctgggtgaaaaaggcgaagtgttggatatcgtagttgaa
caccgtcgcatcgctaaccgtatcgttgaagaatcaatgattgcagccaacgtctgcgca
gccattgtgctgcgcgacaagctgggctttggcatctataacgtgcataacggcttcgat
cctgcctcgattgaacaagcggtcgccgtactggacacgcatggcgttcaggccgacgcg
cagacgctgttgacgctcgatggcttctgcacgctgcgccgcgagctggatgcccagccg
acgcagttcctggatagccgtatccgtcgcttccagtcatttgcagaagtcagcaccaca
ccggggccacactttggtctggggctggaagcttatgccacctggacatccccgatccgt
aaatacggcgatatggtgaaccaccgtttgctaaaagcggttatcaccggacaggccgcg
gaaaaaccgcaggacgacgtcacggtacaactggccgagcgccggcgccttaaccgtatg
gctgagcgtgatgtcggtgactggctgtatgctcgctaccttaaggataaagcaggtaca
gatattcgcttcaacgcggaaatcattgacgtcacgcgcggtggcctgcgcgttcgcctt
ttagataacggcgcggtggtgtttattccgtcatcctttatccacgccgtgcgcgatgaa
ctggtgtgcagccaggaaatgggcaccctctcggtaaaaggcgaagtggtttatcgtcag
ggggatacgctggacgtcatcatcgctgaagttcgtctggaaacccgcggcatcgtggca
aaacctgccgcataa
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