Pectobacterium atrosepticum SCRI1043: ECA2006
Help
Entry
ECA2006 CDS
T00186
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eca03019
]
ECA2006
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECA2006
Messenger RNA biogenesis [BR:
eca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECA2006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
DUF6145
PhoH
Zeta_toxin
Myosin_head
Calmod_bind_C
Motif
Other DBs
NCBI-ProteinID:
CAG74907
UniProt:
Q6D5N5
LinkDB
All DBs
Position
2275609..2279496
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIAAARQKVENR
RASCPTIHYPEQLPVSQKKDEILEALRNNQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLCQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSERDQLQAIFDAVDELTREGPGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIHLAENGHYH
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMVITAALSIQDPRERPMDKKQASDEKH
RRFADKDSDFLAFVNLWDYLREQQKALSSGQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCALLTGLLSHIGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPTLAREMFIRHGLVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKGASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKNRTQREGKDLNALKDQLKDKVQQTLSSVVDDGLEQRGLHVWSFGSL
PNCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVMDLIDDCIACAVDKLIESSGGPVWQEDAFQQLHEKVRAEL
NETVVDIAKQVEQILTAVFTINKRLKGRIDMAMALALSDIKSQMSGLVFRGFVTENGWQR
LPDVLRYLHAIERRLEKLAQDVHRDRAQMLKVEQVQQAWQQWWNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagctaagtgagctaatgcttcgcgatcgg
caacgtttgcgccgccgtttacagggcgcagcgaaggtcagtagcccgcaggctcaggcc
gccatcgctcaggaaattgagggggaaatcgccgcggcacgccagaaagtcgaaaaccgg
cgggcaagctgtccgacgattcactatcctgaacagcttcccgttagccagaaaaaagac
gagatactggaggccctgcgtaataatcaggtaattatcgtcgcaggtgagacggggtcg
ggtaagaccacgcagttgccgaaaatctgtcttgaactgggtcgcggtgtgcacggtctg
attggccacacgcagccgcgccgtctggcggccagaaccgttgccgatcgcattgccgca
gagttggaaacgccgctgggcggcagcgtcggatataaagtccgttttaacgatcaagtc
ggtgacaatacgctggtcaagttgatgaccgacggtattttgctggctgaaattcagcaa
gatcgcctgttgatgcagtacgacacgctgattatcgatgaagcgcacgaacgcagcctg
aatatcgatttcattatgggctatttgtgccagcttttaccaaaacgccccgatttaaaa
gtgattattacgtcggccaccatcgatccgcagcgcttctcccgccattttaataatgcg
ccgatcattgaagtgtctggccgaacgtatccggtggatgtgcgctatcgtcccgtggtg
gaagacgctgatgacagcgagcgcgaccagctacaggcgatttttgatgcggttgatgag
cttacgcgcgaagggccgggggatattctggtcttcatgagcggtgaacgtgaaattcgc
gatacggcagaggcgttgacccgtctggacttgccgcataccgagattctcccgctctat
gcgcgcctgtcgaatcaggaacagaaccgcgtcttccagtcacatcatggccgtcgcatc
gtgctggcgaccaacgtggcggaaacctcattaaccgtgccggggattcgctatgtgatc
gatcccggcaccgcgcgtatcagccgctatagcttccgcaccaaggtgcagcgcctgccg
attgagcctgtctcgcaggcgtcggcgaatcagcgtaaagggcgctgtgggcgtgtcgcc
gctggggtgtgtatccgtctctattccgagcaggatttcctgtcgcgacctgaatttacc
gatcccgaaattcttcgcaccaacctggcttccgttattctacaaatgacgtcgctgggg
ctgggcgatatcgccgcgttcccgtttgttgaagcgccggataagcgcaacattcaggac
ggcgtgcgcttgttggaggagttgggtgcgattcatctggcagagaacggacattaccat
ttgacgccgcaagggcaacagttggcgcaattgccgattgatccgcgtttggcgcgaatg
gtgctggaagcgcgcaaaacgggctgtgtgcgtgaagtgatggtgatcaccgccgcgctg
tcgattcaggacccgcgtgaaaggccgatggataagaagcaggcatcggatgaaaaacac
cgccgctttgccgataaagactctgattttctggctttcgtcaatctgtgggactatcta
cgtgagcagcagaaggcgctgtcttccggccagttccgtcgtcagtgccgcactgatttc
cttaactacctgcgcgttcgcgaatggcaagatatctacacgcaactgcgtcaggtggtg
aaagaattggggctgccggtcaacagcgaaccagctgattacctgagtattcactgtgcg
ttgctcaccgggctgttgtcacatatcgggcagaaagatattgagaaacaagagttcagc
ggcgcgcgtaacgcacggtttgctattttccctggttctggattattcaaaaagccgccc
aaatggacgatggtggccgaactggtggaaaccagccgcctgtggggacgtattgccgcg
cgtattgaaccagagtggatcgagccgctggctcagcacctgattaaacggagctatagc
gatcctcactgggagaaagcgcagggcacagtaatggcacaggagaaggtgacgctcttc
gggctgccgattgtcgcggcgcgtaaggtgaactacagccaaatcgatccgacgctggcg
cgtgagatgttcatccgccatgggctggtggaaggcgattggcaaacgcatcacgccttt
ttccgtgccaatctcaagctgctggcagaggtagaagatttagagcataaatcgcgccgt
cgcgacattctggtggacgacgaaacgctgtttgccttctacgatcagcgcttgccgcat
gatgttgtgtcgtcgcgtcattttgatacatggtggaaaggtgccagccgcgacaacgct
gacctgcttaattttgaaaagagcatgttgatcaaagacggcgcggagaaagtgagcgcg
ctggactacccgaacttctggcatcagggcagtctgaaattgcgcctgtcctatcagttt
gagccgggcgcggatgcagatggcgtgacggtacatattccgttgcctatcctcaaccag
gtgcgtgaagaaggcttcgagtggcagattcccggcgtgcgtcgcgaactgacgatcgcg
ttgattaaatccttgcctaagccgttacgccgtaactttgtccctgcgccgaactatgct
gaggcgtttctggcgcgtaccactcccttggagaaagggttattggatgcgctggaacgt
gaactgcgtctgatgacgggtgtcacggtgccacgcgaagcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacgttccgcgtcattgatgagaaaaacaggacgcagcgggaa
ggtaaagacctgaacgcgctgaaagatcagctcaaagataaagtgcaacaaacgctgtca
tccgtggtggatgatgggttagagcaacgcggtctgcacgtttggagtttcggctcgctg
ccgaattgttatgagcagaagcgtggtggctactcggttaaagcctatcctgcattggtg
gatgaaaaggatagcgtggcgattcgcctgtttgacacgccacaccagcaacagcaggta
atgcgacaaggactgcgccgtctgttgttattgaatatcccgtcgccgatcaaatatctg
catgaaaaactgccgaacaaggcgaaactcggcctctatttcaacccgtacggtaaggtg
atggatctcatcgatgactgtattgcctgtgcggtggacaagctgattgaatcatccggt
ggtcctgtctggcaggaagacgccttccagcagttgcatgagaaagtacgcgcggagctg
aacgagacggtggtcgatatcgccaaacaggttgagcaaatcttgactgccgtcttcacc
attaacaagcgcctgaaagggcgtatagatatggcgatggcgctggcgttaagtgatatc
aaaagccagatgagcggcctggtgttccgcggttttgtgaccgaaaacggctggcagcgc
ctgccggacgtactgcgttatctgcacgcgatagagcgacgtctggagaagctggcgcag
gatgtacatcgtgacagggcgcagatgctgaaagtggaacaggttcaacaggcgtggcag
cagtggtggaataagctgcctgcggaacgacgcgatgacgacgatgtgaaggcggtgcgc
tggatgcttgaggagctgcgcgttagctactttgcccaacagctaggaacgccgttcccg
atctcggataaacgcgtattacaggcgatggagcaggtagaagggtaa
DBGET
integrated database retrieval system
