Pectobacterium atrosepticum SCRI1043: ECA2286
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Entry
ECA2286 CDS
T00186
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eca03032
]
ECA2286 (topA)
03400 DNA repair and recombination proteins [BR:
eca03400
]
ECA2286 (topA)
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ECA2286 (topA)
DNA replication proteins [BR:
eca03032
]
Prokaryotic type
DNA Topoisomerases
ECA2286 (topA)
DNA repair and recombination proteins [BR:
eca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ECA2286 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
YubG_C
Motif
Other DBs
NCBI-ProteinID:
CAG75189
UniProt:
Q6D4V4
LinkDB
All DBs
Position
complement(2590532..2593132)
Genome browser
AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSVSKKSADSTTKDKTKKKV
KKDEKSALVNRMGVDPYHGWEANYEILPGKEKVVSELKALAENADHIYLATDLDREGEAI
AWHLREIIGGDDQRFSRVVFNEITKNAITQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVDREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HHNGKPFKPVNKEQTHAAVSLLENARYVVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYIGEEFGKRYLPEAATGYSNKE
NSQEAHEAIRPSDVGVLADSLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPTVAVGEGLSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYASIISTIQDRGYVRAENRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFNEFSQQLEKAEQDPEEGGMRPNAMVLTSIDC
PTCSRQMGIRTASTGVFLGCSGYALPPKERCKTTINLIPETEVLNVLEGDEAETNALRAR
RRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMACTGETCSNTRKILRNGDVAPPKEDPVPLPELSCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELDRFKDRLPEKLRYLADAPVADKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgatcaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtgcgcgatttaccgacgagt
ggctcagtcagtaaaaagagcgcggactcaacgactaaagataaaacgaaaaagaaagtc
aaaaaggatgagaaatccgcgctagttaatcgtatgggcgtcgatccttatcatggttgg
gaagccaactacgaaatattgccgggtaaggagaaggttgtctccgaactaaaagcgctg
gcggaaaatgccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccatt
gcctggcacctgcgggaaatcattggtggtgacgatcagcgtttcagccgcgtggtgttt
aacgaaatcacgaaaaatgccattacacaggcgtttgaaaaaccagacacgttgaatatt
gaccgcgttaatgcacagcaggcgcgccggtttatggatcgcgttgtggggtacatggtt
tccccgttgctgtggaaaaaaattgctcgtggcctgtctgctgggcgcgtgcagtcggtt
gcggtgcgcctgattgtcgatcgcgagcgtgaaatcaaagcgttcgtgccggaagaatat
tgggaattgcacgccgacttgctggcgggcagcgatattcaactgcaaatgcaggtgacg
caccacaacggcaaaccgtttaagccagtcaataaagagcaaacgcatgcggcggtcagt
ctgctggaaaacgcacgctatgtggttgctgaccgtgaagataagccgaccagtagcaaa
ccgggcgcgccgttcatcacatccacgctgcaacaggctgccagtacgcgtcttggtttt
ggcgtgaaaaagaccatgatgatggcacagcgtctgtacgaagcgggctacattacctac
atgcgtaccgactcaacgaacctcagtcaggatgcactgacgatggtgcgtggctatatc
ggcgaagagttcggcaagcgctacctgccggaagcggcgaccggctacagcaacaaagaa
aattcacaggaagcgcatgaagccattcgtccttccgatgtcggcgtactggccgacagc
ctgaaagatatggaagccgatgcgcagaaactgtatcagttgatttggcgtcagttcgtc
gcctgtcaaatgacgccagcgcaatacgattccaccacgttaatcgtggaagccgcagat
tatcaactgcgcgcgaaaggtcgcacgctgcgtttcgatggctggacgaaagtcatgcca
gcgctgcgtaaaaatgatgaagatcgtacgttgccgaccgttgcggtgggcgaagggctg
tcgttgcagaaactgctgccaggacaacacttcaccaaaccaccggcacgctacagcgat
gcttctctggttaaagagctggaaaaacgcggtattgggcgtccatctacctacgcctct
attatttcaaccattcaggatcgcggctatgtacgggcggaaaaccgccgtttctacgcc
gagaaaatgggtgaaatcgttaccgatcgactggaagaaaacttccgcgaattgatgaat
tacgattttaccgcacgaatggaaagccgcctcgatcaggtcgccaacaatcaggcagaa
tggaaagcggtgctagatgagttcttcaacgaatttagccagcagttggaaaaggcagaa
caggatcctgaagaaggcggtatgcggcctaatgcgatggtgttgaccagcattgactgt
cctacctgctctcgtcaaatgggtattcgcaccgccagtaccggggtgtttctgggctgt
tccggctatgcactgccgccgaaagagcgctgtaaaaccacgatcaatctgataccagaa
actgaagttctgaacgtgttagaaggtgatgaagccgaaactaacgcgctacgtgctcgt
cgtcgctgtgaaaaatgtggtacggcgatggacagctacctgattgataatcagcgtaaa
ctgcacgtttgcgggaataatccggcctgtgatgggtatgagatcgaagctggcgagttt
cgcatcaagggctatgatgggccgatcgttgagtgcgagaaatgtggttccgaaatgcat
ctcaaaatgggacgcttcggcaaatacatggcctgcaccggcgagacgtgtagtaacacg
cgtaagatcctacgtaatggcgatgttgcaccaccgaaagaagatccggtgccgttgcct
gagctgtcctgtgagaagtccgatgcgtatttcgtattgcgtgacggtgcggcaggggta
ttccttgcggccaatacgttcccgaaatctcgtgaaacacgggcaccgctggtagaagaa
ctggatcgattcaaagatcgtttgccggaaaaactgcgctatttggccgatgcccctgtt
gcagataaagacggcaataaaacgcaggtgcgtttcagccgtaaaaccaaacagcaatat
gtctcgtcagaaaaagacggcaaggcaacgggctggtcggcgttttatattgacggaaaa
tgggttgaagggaagaagtaa
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