Pectobacterium atrosepticum SCRI1043: ECA2805
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Entry
ECA2805 CDS
T00186
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECA2805 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eca03019
]
ECA2805 (rhlE)
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECA2805 (rhlE)
Messenger RNA biogenesis [BR:
eca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECA2805 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
CAG75705
UniProt:
Q6D3D9
LinkDB
All DBs
Position
complement(3145672..3147123)
Genome browser
AA seq
483 aa
AA seq
DB search
MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQNVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGGIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGSRGGGSGGARSASPRAPSGAPRGQS
ERSERSQGQGERRSADANRQPRKPSGNSDSPWGTGGKGNSGKGSGEGQRRAPRPQNRSKP
ADK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgaagagcagggt
tatcgcgatcctacccccgttcagcgtcaggcaattcctgtcgtgttggaagggcgcgat
ttaatggccagtgcccaaacgggtacgggtaaaacggcgggctttacgctgccgttattg
caactgctgacgagtcgcgaagcgcagaataaagggaaagggcgccgtccagtacgggcg
ctgatcctgacgccgacccgtgaactggcggcacagattgatgagaacgtgaaggcgtat
agcaaatatttaccccttcgttcactggttgtattcggcggcgtgagcatcaacccgcag
atgatgaagttgcgtggcggcgtggatattctggtggcgacgccgggacgtctgctcgat
ctggaacatcagcgtgctgttgacctgtctcagatcgaaattctggtgctggatgaagca
gaccggatgctggatatgggcttcattcacgatattcgccgtgtactggcgaagctgcct
gctaaacgccaaaacctgctgttctccgccactttctctgatgagatcaaagcgctggcg
aacaaactgttgaccaatccggcttcggtcgaagtcgtgcgtcgtaattctccgtctgaa
ctggtcacgcagaatgtgcattttgttgataagcgccgcaagcgtgaactgctatcgcag
ctaattggtgaaaataactggcagcaggtactggtctttacccgtaccaagcacggggct
aaccacttggctgagctgttggaaaaagacggtatcaccgctgcggctatccacggtaat
aaaagtcagggtgcgcgtactcgcgcgctggccaacttcaaggacggcggcatccgtgtg
ctggtcgcgacagatatcgccgcgcgtggtctggatatcgaccagttgccgcacgttgtg
aactatgaactgccgaacgtgccggaagattacgttcaccgtatcggccgtaccggtcgt
gcagaagcgacgggcgaagcgctgtcgctggtgtgtgtggatgaacacaagctgctgcgt
gacatcgaacgtctgctgaagcgtgagattccgcgtatcgctattgaaggctacgagccg
gatccgtccatcaaggcagaaccgattgtgaatggccgtcagggcagccgtggtggtggt
agtggtggtgcgcgtagtgcgtctcctcgtgcaccgtctggcgcaccacgcggtcagtcc
gaacgcagcgaacgtagtcaaggtcagggcgagcgccgttcagccgatgctaatcgtcag
ccgcgtaaaccgagcggtaatagcgatagcccatggggtactggcggaaaagggaatagt
ggcaagggcagtggcgaaggacaacgccgcgcaccgcgaccgcaaaaccgcagcaagcca
gcggacaagtaa
DBGET
integrated database retrieval system
