Pectobacterium atrosepticum SCRI1043: ECA3112
Help
Entry
ECA3112 CDS
T00186
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca00040
Pentose and glucuronate interconversions
eca01100
Metabolic pathways
eca02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
ECA3112
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ECA3112
Enzymes [BR:
eca01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
ECA3112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
CAG76011
UniProt:
Q6D2I3
LinkDB
All DBs
Position
complement(3473256..3474824)
Genome browser
AA seq
522 aa
AA seq
DB search
MFRTVIGTGRLRTCAVAIALSGIVLSGCDNSQQPVAETAPPDLQVKTTPFGWAAQYQNTD
GKFYATTGGEGAHENSIYIVNNRQELKNALNNIRSAHYIAGDSDAELQAKLEPKIIYWQG
TIRGDDLGSGRNANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGTDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSDAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGEKGNWNARYDSVSINASKNVWVDHCTFTDGEYPD
HLEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFEGGNA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSALQETEKATATSSGKAVQGWAL
ETCTNELEWSPPYVYSVGKSIAAVEKYVLENAGSGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattgggactggtcgcttacgcacctgtgcggtagctattgccctt
tcagggatagtactttctgggtgtgacaatagtcagcagccagtggcagaaacggcgccg
ccagatttgcaggtgaaaaccaccccgtttggttgggctgcacaatatcagaacacggac
ggtaagttttatgcgacgaccggaggtgagggcgcacatgaaaatagcatttatatcgtc
aacaatcgtcaggaattgaaaaacgcgttaaataatattcgcagcgcccattatatcgca
ggcgattccgatgcggagttacaggcaaaattagaacctaagattatctattggcaaggt
actatccgtggtgatgatttagggagtggacgtaatgcgaatgcggaggattataaaacc
aaaccgaataaaactacgttcgattttgatttatatgtcaaagccttcgatcagaattat
atggctcagctgaaagccacagcggatgcgggtggaactgatgcggcagcagccagtgca
gagcttagcctgttgaaaaaacagaatggtcagcgttcacagtatgctaacaaccagaaa
gcgcagattcaatttcaggttccgccgaataccacgattttaggtgtaggtagcgacgcc
aaactggtggaaggctatttatccctcaatacgttaagccacacgttcggcaaaacggat
aacagcaacatcattatccgcaatattacgtttcaggcaccgcgtgactttgccccagct
tgggatgcgggcgacggtgagaaaggcaactggaatgcgcgttatgattctgtatcaatt
aatgccagcaaaaatgtctgggtcgaccactgcacctttacggatggtgaatatcccgat
catttagagccggtgctgttcggtaaacatatccaacgccacgatggcctgctggatata
gaagatggtgctgattacctgacgatttcctacaacatttttgctcagcatgacaaaacg
gtattaattggctctggtgacggtgataaaggggaatatcggatcacctttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgtgtgcgttttggtcaggtgcatttgctg
aataactatcatcgtggcgcaacggatacaaactatcccattctgtatgccattgggatg
ggcttcgattcatcgattctttctgagagtaacgtttttaactttgagggcggcaatgca
gacgaaaaactgattattggtgcttataagggaagtaagtttaaagacaacggttcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattggataagtgcagcgcattg
caagaaaccgagaaagctactgcgacaagctctgggaaagcagtacaaggatgggcgctg
gagacttgtaccaatgaattggaatggagcccgccttatgtgtatagcgttgggaaatcc
atcgccgccgttgagaaatatgttctggaaaatgctggctctggaaagctggatatttct
ctcccctag
DBGET
integrated database retrieval system
