Pectobacterium atrosepticum SCRI1043: ECA4213
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Entry
ECA4213 CDS
T00186
Symbol
rhlB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
eca
Pectobacterium atrosepticum SCRI1043
Pathway
eca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECA4213 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eca03019
]
ECA4213 (rhlB)
Enzymes [BR:
eca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECA4213 (rhlB)
Messenger RNA biogenesis [BR:
eca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECA4213 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
CAG77110
UniProt:
Q6CZD9
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All DBs
Position
4709598..4710890
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AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYG
GDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPATSQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGSIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPLSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNSAPRRSG
APRNNRKRAD
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
atagaagctcttgaaagtaaagggtttcattactgcacgcctattcaggcgttagctctg
ccattaactttgtcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttctcgcgtctactttccattatctgctttcacaccctgcaaacgcagagcgt
caaaccaatcaaccgcgtgccttaattatggcaccaacccgtgaactggctgtccagatt
cactctgatgcagaagcgctgtctcacctgactgggttaaaactgggtttagcctacggt
ggcgatggctacgacaaacagcttaaagtgctggaaaacggcgttgatattttggtcggc
accaccggccgcctgatcgactatgccaaacaaaaccacatcaatctgggcgcgattcag
gtcgtcgtactggacgaagcggatcgcatgtacgatctcggcttcatcaaagatatccgc
tggctgttccgccgcatgccggcaacgtcacagcgtctgaatatgctcttttccgctacg
ctctcctaccgagtgcgtgaactcgcgtttgaacagatgaataacgcagagtacgtggaa
gtcgaaccggaacagaaaaccggccaccgcattacagaagaactgttttatccgtccaac
gaagagaaaatgcgtctgctccagaccttgttggaagaagagtggccggatcgctgcatt
attttcgccaataccaagcatcgctgcgaagacgtctggggtcatctggctgccgatggc
catcgcgttgggctgctgacgggcgatgtagcacagaaaaaacgcctgcgtattctggaa
gagtttacccagggtagtattgatattctggtagcaacggacgttgcagcacgcggttta
cacattccttctgtaactcacgttttcaactacgatctgccggatgactgcgaagactac
gttcaccgtattggtcgtactggccgtgcgggacaaagcggattttctatcagtctggcc
tgtgaagagtacgcgctgaatctcccagctatcgaaacctatatcggtcacggtatccca
ctcagcaaatacaacagcgacgcgctgatgaatgatttacctgcgccgaagcgtttaacg
cgcccaccgcgttccaataatggcccgcgccgacacaatagtgcgccacgccgcagcgga
gcgccccgtaataaccgtaaacgagcggactaa
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