Ensifer canadensis: J3R84_05155
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Entry
J3R84_05155 CDS
T09166
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecaa
Ensifer canadensis
Pathway
ecaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3R84_05155 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecaa03019
]
J3R84_05155 (rnr)
03016 Transfer RNA biogenesis [BR:
ecaa03016
]
J3R84_05155 (rnr)
Enzymes [BR:
ecaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J3R84_05155 (rnr)
Messenger RNA biogenesis [BR:
ecaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J3R84_05155 (rnr)
Transfer RNA biogenesis [BR:
ecaa03016
]
Prokaryotic type
tRNA degradation factors
J3R84_05155 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
MarR_2
FUSC-like
Motif
Other DBs
NCBI-ProteinID:
UBI76528
LinkDB
All DBs
Position
complement(1063649..1066018)
Genome browser
AA seq
789 aa
AA seq
DB search
MTRIPRDPTERSGKGSGRKEGRAAKAAPASEKTSIIHGAVPPRDVLMRFIAENPERASKR
EIAKAFGLKGDTRVELKALLRSLEADGLVEKKRKSLVRPGALPPVTVLDITMRDVDGELI
GRPAEWLDDDGVAPAVLIKQSTVGKDKGKTPVGGLGDRVLAKIFPAKDRGGPAYTARIIK
VLDKRRDAVLGVFRATPGGGGRLMPIEKRGEEILVDPDFVGDAKDGDLIEVQLTRLGRYG
LPRAQVQNVVGSVASEKAISMIAIYAHGIPHVFPERALNEAEDAGPATMAHREDWRSLPL
ITIDPADAKDHDDAVHAEPDPSEDNPGGVIVTVAIADVSWYVRPKSALDLEALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMRFSKEGRKAGHTFHRIMMKSAAKLSYQ
QAQAAIDGNPDDKTGPILDTILKPLWEAYRTLTRGRDRRQPLELNMPERKIILKPDGTVD
RVFVPDRLDAHKLIEEMMIQANVAAAETLEQKRQVLIYRVHDQPSLAKQESLREFLATLD
IALVKGGNMRSNHFNGILSKAEGKPFETMVNEMVLRSQSQAIYSPENIGHFGLNLLKYAH
FTSPIRRYADLIVHRALVASLGLGEGGLTPQEEAVLDDIAAEISTFERRAMAAERDTVDR
LIAHHLNGRIGEEFEGRVAGVTKAGLFVTLPAYGANGFVPISTLGRDYFIYDEAHQALSG
EKTGLGFRLGDQVQVKLVEAVPLAGALRFEMISEGRKMPTATRSFHKSGRRDRSSPRKTP
GTRPPRGKR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagaataccgcgcgacccgaccgaaagatccggaaaaggctccggcaggaaagag
ggccgcgcggcaaaggccgcgccggcgtcggagaaaacctcgatcatccacggtgcggtt
cccccgcgcgatgtgctgatgcgcttcatcgccgagaatccggaacgcgcctccaagcga
gaaattgccaaagcattcggtctcaagggcgacacgcgcgtcgaactcaaggcgctgctg
cgttcgttggaagcagacgggctggtcgagaagaagcgcaagtcgctcgtgcgtccgggc
gcccttcccccggttaccgtgctcgatatcaccatgcgcgacgttgacggcgaactgatc
ggccgcccggccgaatggctggatgacgatggcgtcgcaccggcagtgctgatcaagcag
tcgactgtcggcaaggacaagggtaagacgccggtcggcggcctcggcgaccgcgtgctt
gcaaagatcttcccggccaaggaccgtggcggcccagcctataccgcacgcatcatcaag
gtgctcgataagcgccgggacgccgtcctcggcgtcttccgcgccacgccgggtggcggc
gggcgcctgatgccgatcgaaaagcgcggcgaggaaatccttgttgatccggacttcgtc
ggcgacgccaaggacggcgatctcatcgaagtccaactgacgcgccttggccgctacggc
ctgccgcgcgctcaggttcaaaacgtcgtcggttcggtcgcttcggaaaaggcgatctcg
atgatcgccatctatgcccacggcatcccgcacgtctttccggaacgcgctctgaacgaa
gcggaagacgccggcccggccaccatggcgcatcgggaagactggcgctcgctgccgctg
atcaccatcgacccggccgatgcgaaggaccacgacgatgctgttcacgcggagccggac
ccgtcggaggacaatccgggcggcgtcatcgtcaccgtcgcgattgccgacgtctcctgg
tacgtccggccgaaatcggcacttgacctcgaagcgttgaagcgcggcaactcggtctat
ttcccggaccgagtcgttccgatgctgccggagcggatctccaacgacctctgctcgctc
aaggaaggcgtcgaccggccggcgctcgccgtgcgcatgcgcttttccaaggagggccgc
aaggcgggccacaccttccatcgcatcatgatgaagagcgcggccaagctttcctaccag
caggcccaggccgccattgacggcaatcccgacgacaagaccggcccgatcctcgacacg
atcctgaagccgctgtgggaggcctatcgcacgctcacgcgcggtcgtgaccgccgccag
ccgctcgagttgaacatgcccgagcgcaagatcatcttgaagcccgacggcaccgtcgat
cgcgtcttcgtgccggaccgcctcgacgcgcacaagctgatcgaagaaatgatgatccag
gcgaacgtcgccgccgccgagacgctcgagcagaagcgccaggtgctgatctaccgggtg
cacgaccagccgtcgctggccaagcaggagagcctgcgcgagttcctggccacgctcgac
atcgcgctggtcaagggcggcaacatgcgctcgaaccacttcaacggcatcctgtccaag
gccgaaggcaagccgttcgaaaccatggtcaacgagatggtgctgcgctcccagagccag
gcgatctacagccctgagaacatcggccatttcggcctcaacctgttgaaatatgcgcat
ttcacttcgccgatccggcgctacgccgatctgatcgtgcaccgagcgctggtcgcctcg
ctcggtcttggcgaaggcggtctcacgccgcaggaagaggcggtgctcgacgatatcgcc
gctgagatctcgaccttcgagcgccgggccatggccgccgagcgcgatactgtcgaccgg
ctgatcgcccatcatctgaacggccgcatcggcgaggaattcgaaggccgtgttgccggc
gtcaccaaggcgggactttttgtcaccctgccggcctatggcgccaacgggttcgtacct
atatctacgctcggacgagactacttcatctatgatgaagcgcatcaggccctttccggc
gaaaagaccggtctcggctttcgtctcggcgatcaggtgcaggtcaaattggtcgaagcc
gtaccgcttgccggcgcgcttcgcttcgagatgatcagcgaaggacggaaaatgccgacc
gccacgcgctccttccacaaatcggggcgtcgtgatcgctcgagcccgcgcaagacgccg
ggtacacgaccgccgcgcggaaagcgctag
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