Ensifer canadensis: J3R84_05410
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Entry
J3R84_05410 CDS
T09166
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ecaa
Ensifer canadensis
Pathway
ecaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3R84_05410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecaa03021
]
J3R84_05410 (rpoC)
03400 DNA repair and recombination proteins [BR:
ecaa03400
]
J3R84_05410 (rpoC)
Enzymes [BR:
ecaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3R84_05410 (rpoC)
Transcription machinery [BR:
ecaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3R84_05410 (rpoC)
DNA repair and recombination proteins [BR:
ecaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3R84_05410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UBI76572
LinkDB
All DBs
Position
1115720..1119925
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKENQLLSEEDYMLAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSDLAETTSDLKQKKLMKRLKIVENFMDSGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDMGELHHALE
TKSVTLHAKIRGRFKTVDAEGNPVSKIYETTPGRMIIGELLPRNVNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVADEMMARIKAVEFDDNGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTENGLTMTAIVDAGQVVASLGARILGRTA
LDDIDHPVTGVRLVDAGRMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGILVAMGRNMAVQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLEATDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGA
VLKLSRGGDARFMLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAVIAEIDGTIRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDGLIEQGKKPAYGDPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAIAGKVDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDEMILEERRKG
TGADVATPMLADLAKENAAAE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagactttcgattcc
atccggatttcgatcgcctcgccggagaagattctttcctggtcttacggtgagatcaag
aagccggagacgatcaactatcgtacgttcaagccggaacgtgacggtctcttctgcgct
cgtatcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgttgaagttacgctgtcgcgcgttcgccgt
gagcgcatgggccatattgagctcgccgctcccgttgcccacatctggttcctgaagtcg
ctgccgagccgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tacttcgagaactacatcgtcaccgagcccggtctgacgtcgctgaaggaaaaccagctc
ctcagcgaagaagactacatgctcgccgtcgacgagttcggcgaagatcagttcaccgcg
atgatcggtgctgaagcgatctatgaaatgctcgcttcgatgaacctcgagaagatcgct
ggcgatctgcgttcggatctggccgagaccacctcggatctgaagcagaagaagctgatg
aagcggttgaagatcgtcgagaacttcatggattccggcaatcgcccggaatggatgatc
atgaaggtcgttccggtgatcccgccggacctgcgcccgctcgtgccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgatctctatcgccgcgtgatcaaccgtaacaaccgt
ctgaagcgtctgatcgaactgcgcgctccaggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtggacgcgctgttcgacaacggccgtcgcggtcgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactactccggccgctcggttatcgtgaccggt
ccggagctgaagctgcaccagtgcggtcttccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgctcgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctcgtcgaaaaggaaaagccggaagtctgggatatcctggacgaggtcatccgcgag
catccggttctgttgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
ccgaccctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagctc
gaagcacgcgtgctgatgatgtcgacgaacaacattctgcacccggctaacggcgcgccg
atcatcgttccgtcgcaggacatggttctgggtctctactatctgtcgatcctgaaccag
aacgagcccggcgaaggcatggcgttttctgacatgggcgagctgcatcacgcgctcgaa
accaagtccgtgacactgcacgccaagatccgtggccgtttcaagaccgtcgatgccgag
ggcaacccggtttcgaagatctacgaaaccacgcctggccgcatgatcatcggtgaactg
ttgccgcgcaacgtcaacgtgccgttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggtcagaaagacacggtcatcttc
tgcgaccgcatcatgcagctcggctttgcccatgcttgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggacaccaaggtgaagatcgtcggcgatactgaagcgctc
gtgaaggaatacgagcagcagtataatgacggcctcatcacccagggcgaaaagtacaac
aaggtcgttgacgcctggggcaaggctaccgagaaggtcgccgacgaaatgatggcccgc
attaaggctgtggagtttgacgacaacggccgtcagaagccgatgaactcgatctacatg
atgtcgcactccggcgcccgtggttctccgaaccagatgcgtcagctgggcggcatgcgc
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggtctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctggcc
gacaccgccttgaagaccgcgaactcgggctacctgacgcgtcgtctcgtcgacgtggcg
caggattgcatcgtcaactccgtcgattgcggcaccgagaatggcctcaccatgacggcg
atcgtcgatgccggtcaggttgtggcttcgcttggcgctcgtattcttggccgtacggct
ctggacgacatcgatcacccggtcacgggcgttcgtctcgtcgacgccggccggatgatc
ctggaacccgacgtcatcgagatcgaaaaggctggtatccagtcgatccgcatccgttcg
gcgctgacctgcgaaatccagacgggcgtttgcggcgtctgctacggccgcgacctggca
cgtggtacgccggtcaacatgggcgaagcggttggcgttatcgctgcacagtcgatcggt
gaaccgggcacccagctcaccatgcgtaccttccacttgggcggtacggcgaccgtggtc
gaccagtcgttcctggaagcgtcctacgaaggcacggtacagatcaagaaccgcaacatg
ctgcgcaactctgacggcatccttgtcgccatgggtcgtaacatggccgtccagatcctc
gacgaacgtggtgtcgagcgctcctcgcagcgtgtcgcctacggttcgaagatcttcgtc
gacgatggtgacaaggtgaagcgcggtcagcgtcttgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggtaccgttcacttcgaagacgtcgtcgacggcatctcc
gtgctcgaagcgaccgacgagtccaccggcatcaccaagcgtcaggttatcgattggcgt
tcgacgccgcgcggtaccgacctgaagccggcgatcgtcatcaaggacaagaacggcgcg
gtcctgaagctgtcgcgtggtggtgacgcccgcttcatgctttcggttgacgccattctc
tcggttgaaccgggcacgaaggtttcccagggtgacgtgctggcacgttcgccgctggaa
agcgccaagaccaaggatatcaccggtggtctgccgcgcgttgccgaactgttcgaagca
cgtcgtccgaaggatcacgccgtcatcgctgagatcgatggtacgatccgcttcggccgc
gactacaagaacaagcgtcgcgttctgatcgagcctgctgaagacggtgttgagccggtc
gaatacctgatcccgaagggcaagcccttccatcttcaggatggcgactacatcgaaaag
ggcgactacatcctcgacggcaacccggcgccgcacgacatcctggcgatcaagggagtg
gaagcactcgcttcctacctggtcaacgaaatccaggaagtctaccgactgcagggcgtt
gtgatcaacgacaagcacatcgaagtcatcgttcgtcagatgctgcagaaggtggaaatc
accgatgccggcgactcgacctacatcgtcggtgacaatgtcgatcgcatcgagctcgaa
gacgtcaacgacggcctgatcgaacagggcaagaagccggcatacggcgatccggtcctg
ctcggcatcaccaaggcctcgctgcagacaccgtcgttcatctcggcggcgtcgttccag
gaaaccaccaaggtgctgaccgaagcggcgatcgccggcaaggtcgacggcctgcagggt
ctgaaggaaaacgtcatcgtcggccgtctgatcccggctggtaccggcggaacgatgacg
cagatccgccgcatcgcgacggcgcgcgacgagatgattctcgaagagcgtcgcaagggt
acgggcgcagatgttgccaccccgatgctcgccgatctcgcgaaggaaaacgcagcggcc
gaataa
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integrated database retrieval system
