Ensifer canadensis: J3R84_12695
Help
Entry
J3R84_12695 CDS
T09166
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ecaa
Ensifer canadensis
Pathway
ecaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3R84_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecaa03019
]
J3R84_12695
Enzymes [BR:
ecaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3R84_12695
Messenger RNA biogenesis [BR:
ecaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3R84_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UBI74352
LinkDB
All DBs
Position
2611502..2613052
Genome browser
AA seq
516 aa
AA seq
DB search
MSTFKDLGLSEHILETLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLINRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVQVTPPGKAADKVEQYVHFVPGKDLKTTILKKT
LTDNPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKSFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEIRLLRD
IEKLMGINIAVASGEAPADQARPSKGRGGRGNGNGNGQHRGNGGGGQRQDARPRRERPAR
QSALAPSSFAGDDLLRDDRPKQDRRDQRPAGQPHADGRSEGNRNHEPKKHHGRPGQKPGE
WRNKGPRPEGQAGDRREGGQGGMRRGAGGGNRGQQG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaccttcaaagatcttggtctttccgaacacattctggagaccctgtccgccaac
ggcttcgaaaagccgacgccgatccaggcgcaggccattccgctggtgttgaagggccac
gacctcatcggtctcgcccagaccggaaccggcaagacggccgccttcggcctgccgatg
atcgaaaagctcgttgccgacggcaagcgccccgacccgcgcaacatccgcgccctggtg
ctggcgccgacccgcgaactggtcaaccagatcgcagccaacctcaagctgttcgtcaag
aagtccccgctgaagatcggcgttgtcgtcggcggcgtctcgatcaacaagcagaccgaa
cagctcgcccgcggcgtcgacatcctggtcgcaacgccgggccgcctgctcgacctcatc
aaccgcaaggccgtgacgctgacccagggtcgctacctcgtgctcgacgaagccgaccag
atgctcgatctcggcttcatccatgacctgcgcaagatttcgaagctcgtgccgaagaac
cgccagacgctgctgttctcggcgacgatgccgaagctgatcgctgaactcgccggcgaa
tatctgaccgacccggtcaaggttcaggtgacgcctccgggcaaggccgccgacaaggtc
gaacagtatgttcatttcgtccccggcaaggacctgaagacgaccatcctcaagaagacc
ctgaccgacaatccggatggcctgtcgctgatcttcagccgtaccaagcatggcgccgag
aagctgatgaagcatctcgaccacgtcggcttcaaggccgcctcgatccatggcaacaag
agccagggccagcgtgagcgtgcgctcaagtccttccgtgacggtgagatccgcgtgctc
gtggcaaccgacgtcgctgcccgcggcatcgacatccccggcgtcacccacgtctacaac
tacgacctgccggaagttcccgatgcctacgttcaccgcatcggccgtactgcccgcgcc
ggccgcgacggcatcgcgatcgctttctgcgcaccggacgaaatccgcctgcttcgcgac
atcgagaagctgatgggcatcaacatcgcggttgccagcggcgaagcgcctgccgaccag
gcccgtccgtccaagggacgcggcggtcgcggcaacggcaatggcaacggccagcaccgc
ggcaatggcggcggcggccagcgtcaggacgcccgcccgcgccgcgaacgcccggctcgc
cagtcggcactggctccaagcagctttgccggtgacgatcttctgcgcgacgaccgcccg
aagcaggaccgccgcgatcagcgtccggctggccagccccacgccgacggccgttcggaa
ggcaaccgcaaccacgaacccaagaagcaccacggtcgtcccggccagaagccgggcgaa
tggcgcaacaagggcccgcgccctgaaggccaggccggcgaccgccgcgaaggcggccag
ggcggcatgcgtcgtggcgccggtggcggcaaccgcggccagcagggctga
DBGET
integrated database retrieval system
