Erigeron canadensis (horseweed): 122578123
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Entry
122578123 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122578123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122578123
03012 Translation factors [BR:
ecad03012
]
122578123
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122578123
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122578123
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122578123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_11
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
122578123
NCBI-ProteinID:
XP_043605946
LinkDB
All DBs
Position
8:39274525..39284579
Genome browser
AA seq
1152 aa
AA seq
DB search
MEVGSLNITTVFSCHQSLPKTSSSRRLSKLRPSHSSSGSFRYPLPTLRLRSSINSVANIS
PASPSVVENDHNCEFQLPPNPGTCSSDNIDSWKWRLTTLLHDKDKQELVSREKQDRRDFE
QIAALANELGLHSRLYFKVVVVSKIPLPNYRFDLDDKRPQREVTLPLGLQTRVHAHLEKY
LSRKPKSMDGFRDNLFSTTITNGSIATNEELFGKRELSSQSKAAEDKVLWRKSMQLHVEQ
QAWQKSSEGQKMLEFRRSLPAYKEKDAILSSITKNQVVIISGETGCGKTTQIPQYILQSE
ISSLRGATCNIICTQPRRISAMSVSERIATERGENLGETVGYKVRFEGMKGKNTRLVFYT
TGILLRRLLVDRDLKGVTHIIMDEIHERGIDEDFLLTVLKELLPRRPELRLVLMSATLNA
EIFSSYFGGAPMVHIPGSMHPVRTYFLENILESTGYRLTADNQIDDYGQVWKINKQTSNR
RKSQIASVVEEALGSADFSEYSQQTQDSLLCWNPNSLNFNLIECLLCSICENEEPGGILV
FMTGWDDISSLKEKLQSNSVLGDSSRVLLLTCHGSMASSEQRLIFEKADSGVRKIVLATN
IAETSITIDDLVFVIDCGKAKEASYDALNNTPCLLPSWISKVSAKQRRGRAGRVQPGECY
HLYPRCVCDSFTDYQLPKILRMPLQSLCLQIKSLNLGSISGFLSRSLQSPDPLAVQHAIE
YLKIIGALDEYENLTILGHYLTMLPMEPKLGKMLVLGAVLNCLDPMLTIVAGLSVRDPFL
APLEKRELAEAAKAQFSHDFSDHLALLRAYNGWKMAEQKQSGYKYCWRNFLSVQSMKAID
SMRIEFQSVLKDIRLISNKTTFYNTYSYDEHLIRAVICYGLYPGVCSIVHKETSLSLKTM
EDGQVFLNSNSVNARDSKIRYPWLVFYEKMKVNSVYLRDSTAVSDSILLLFGGSISMGDV
QEGHLKMMRGYLEFFMEPEVARMYQILRRELDELFQCKLMNPRMNLPAQHELLSAIQLVL
SGDQCSGRFVFDHQVIPSLLSQVPASLPPTQPLGSEIESGPGGDNSKSQLQTLLARAGYS
APVYKTDFTNNQFSAVCEFNGMQIMGSPCKNKKQAEKDAASKALDWLLGGNRGAREFIDC
MSMMMKSNKNRK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcggttctcttaatatcaccaccgtcttctcatgccaccaatccttacctaaa
acctcctcatctcgacgcctcagcaaactccggccatcgcattcttcctccggcagcttc
cggtaccctcttccgactctccgccttcgttcctccatcaattcagttgccaatatatcc
cctgcttccccatctgttgttgaaaatgatcataattgtgagttccagcttcctcccaat
ccaggtacttgctcatccgataacatagattcttggaaatggaggttaacaacattactg
catgacaaggataaacaagagctggtgtcgagggaaaaacaagacagacgtgattttgag
caaatagcagctctagcaaatgaattaggtttgcatagccgtttgtatttcaaagtagtt
gttgtcagcaaaatcccgctgccaaattacaggtttgatctggatgacaagcggccgcag
agggaggtgaccttgcctctggggttgcaaacgagagttcatgctcatcttgaaaaatat
ctttctcgcaaacctaagagcatggatggctttagagataatttgttttcaaccacgatt
actaatggcagtattgctactaatgaagaattatttgggaaaagagaattgtcctcacaa
agtaaggctgcagaggacaaagttctctggcgaaaaagtatgcagttacatgtggagcaa
caagcttggcagaaatcttcagaaggtcagaaaatgcttgagttccgtaggagtctccct
gcttataaagagaaggatgcaatactgagttctattacaaagaaccaggttgttatcatc
tcaggtgaaactggctgtggaaagacgacacagattccgcaatatattttacagtctgag
attagttctctccgtggggcgacatgtaacatcatatgtactcagcctcgacgaatatct
gctatgtctgtctctgaaagaattgctaccgagagaggggagaacttgggtgaaacagtt
ggatataaagttaggtttgagggcatgaaaggaaagaacacccgcctagtgttttatacc
acgggaatcttattgagaagattgttggttgatagagatctaaaaggcgtgactcatatt
atcatggatgagattcatgagcgtggaattgatgaagattttttgcttactgttctgaaa
gaattacttcctcgccggcctgaattaaggcttgttttgatgagtgcaactctgaatgca
gagattttctcatcttactttggtggtgctccaatggttcatataccgggttcaatgcat
cctgtgcgcacctattttctggaaaatattctggaatcaaccggatacagattgacagca
gacaatcaaattgatgattatggtcaagtatggaaaataaataaacagacttcaaatcga
aggaagagccaaattgcatcagttgttgaggaagcacttggatctgccgacttcagcgaa
tacagtcaacagacacaagattctttgctgtgctggaaccccaattctctaaatttcaac
ctcatagaatgcctactatgtagcatatgtgagaatgaagagcctgggggtatattagtc
tttatgactggatgggatgatattagttctctgaaggagaagttacaatctaattcagtt
ttgggcgactcaagtcgagttttattgctgacatgtcatggttctatggctagctcagag
cagaggttaatatttgaaaaagcagatagtggagtgaggaagatagtgttggctacgaat
attgctgagaccagtatcacaatagatgacttggtttttgtaattgattgtggcaaggcc
aaagaggcatcgtatgatgcacttaacaatactccttgccttcttccttcttggatatcc
aaggtttctgctaaacaaagaagaggaagagctggtcgtgttcaacctggagaatgttac
catctatatcccagatgcgtgtgtgattcttttactgattatcaattgccaaagatattg
agaatgcctttgcaatccctttgtctgcaaattaaaagtttgaatcttggaagcatttct
ggattcttatccaggtctttgcagtcacctgatccgctagcggttcaacatgctattgaa
tatctcaagataattggtgctttggatgagtatgaaaatctgaccatattgggccattac
ttgactatgcttccaatggaacccaaacttggaaaaatgcttgtattgggtgcagttttg
aattgccttgatcctatgttgactattgttgctggtctaagcgttagagatcccttcctt
gcacctttggaaaaaagggagttggcagaggctgctaaagcacaattttcccatgatttt
agtgaccatcttgcccttttacgggcatacaatggctggaaaatggctgaacaaaaacaa
tctggatataaatactgttggaggaactttctctctgtacaatcaatgaaagctatcgat
tccatgcgaatagaatttcagtccgtacttaaagatatacgtcttattagcaataaaaca
accttttacaacacttatagctatgatgagcatctcattcgtgcagttatctgttatggc
ttatatccaggagtttgctctattgtgcacaaagaaacctctttatcactgaaaacaatg
gaggatggtcaggtgttcttaaattcaaattcagttaatgcacgtgattccaaaatacga
tacccatggctggtcttctacgaaaagatgaaagtaaactctgtgtatcttcgagattca
acagctgtatctgattcaatactgctcctatttggtggaagcatttcaatgggtgatgtt
caggagggccatttgaaaatgatgagaggatacttagagtttttcatggaaccagaagta
gcaagaatgtatcaaatcttgaggcgcgagcttgatgagttatttcagtgtaaattaatg
aatccacgaatgaacttacctgctcagcacgaacttttatctgctatacagttggtactc
tctggggatcaatgtagcggtcggtttgtatttgaccatcaggtgataccttctctttta
tcacaagtaccggcatcgctaccaccaacacaacctctaggttctgagatagagagtgga
ccaggaggtgacaattctaaaagtcaactccaaacactactggctagagcaggttatagt
gccccagtctacaaaactgatttcaccaacaaccagtttagtgccgtttgtgagttcaat
ggcatgcagatcatgggtagtccttgcaaaaacaagaagcaagccgaaaaagatgctgcc
tctaaggctttggattggcttttgggtggcaatcgtggggctcgtgaatttattgactgc
atgtcaatgatgatgaagagcaataagaaccgcaaataa
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integrated database retrieval system
