Erigeron canadensis (horseweed): 122578288
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Entry
122578288 CDS
T07610
Name
(RefSeq) retinoblastoma-related protein isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122578288
Transcription factors [BR:
ecad03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
122578288
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Rb_C
Motif
Other DBs
NCBI-GeneID:
122578288
NCBI-ProteinID:
XP_043606149
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All DBs
Position
8:43605626..43612781
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AA seq
1006 aa
AA seq
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MEANKPLNPNVTDDSANGIAITFEARFQDFCKGRLMMDDKALDEAMKLFEKSKHLFLTNT
STLGSGTPEEAEHYWFAFLLFSLKRLSHKDAAEDSPNTNENGFNLCQILREAKLNYVDFF
KELPQFLVKTGPILSNIYGSDWETRLQAKELQANFVHLSILSKYYKRAFRELFIVSHDNI
EGQSAVAKTPDYILNCHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPPRY
RNFNISDASRFVIKEGKGVDLLASLCNMYETSEDELRKTMVKSNTVVADILKKQPCLASE
SQNGNLDNIDTDGLTYFEGLLEESSLSSSLSILEKDYNDAIFQDGELDEKLFINDDESLL
GSSSLSGGAVNMSGTKRKLDLMSSPTKTMTSPLSPFRSPSKIMTSPVSTAMTTAKWLRTI
VSPLPSTPSIELERFLSSCDKDVTFDVIKRARIILEAIFPSSGLGDRNIISNMQSTNSMD
NAWAEQRRLEALKLYYRVLQAMCTAESQILHGNNLTSLLTNERFHRCMLACSAELVLATH
KTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGS
SMYNSLTVARPALSSEINRLGLLAEPMPSLDAIALQTNVSCGGLPPVPSLQKRDLSPGKN
NDLRSPKRVCTEYRSVLVERNSFTSPVKDRLLGINNSKSKLLSPALQSAFASPTRPNPAG
RGETCAETAVNLFFSKIIKLGAVRINGMVERLQLSQQIRERVYCLFQQILSQRTALFFNR
HIDQIILCCFYGVAKISQLSLTFKEIIFNYRKQPHCKPQVFRAVFVNDRSSSLRHGQKTA
QDHVDIIVFYNEIFIPAVKPLLVDLAPATIAKATNQVSEAKNRDEAPCPGSPKVSTFPSL
PDMSPKKVSAVHNVYVSPLRSTKMDALISHGSKSYYACVGESTHAYQSPSKDLTAINNRL
NVNRKVRGTLNFDEADVVVSDSLVANSLYLQNGNGPSTSSGQLKTE
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaataagccgttaaatcctaacgttactgatgattcggctaacggaattgct
attactttcgaggctcgatttcaagatttctgcaaggggagattaatgatggacgataag
gcgttagacgaagcgatgaagctgttcgaaaaaagcaaacatcttttcttgactaatact
tctactcttggaagtgggacgcctgaggaagcggagcactactggtttgcatttttgttg
ttctccttgaaaagattaagccacaaggatgctgcggaagattcccctaataccaatgaa
aatgggttcaacctgtgccaaatacttagggaggcaaaactgaattatgtagatttcttc
aaagaactgcctcagtttttagtcaagacaggtccaattttaagtaatatctatggttct
gattgggaaactagacttcaggcaaaagagttacaggccaattttgtgcatctcagcatt
ttaagcaagtactataaacgtgcatttcgcgagcttttcattgtaagccatgataatatt
gagggtcagtcagccgttgccaagactccggactacatattgaactgtcatcgttttgga
tggctactgtttctggctcttcgagtccatgcattcagccgttttaaagacttggtgact
tgcactaatggattggtctctattctggcgattttgattattcatattccacctcgctac
agaaactttaatatcagtgacgcttcacgctttgttataaaggaggggaaaggtgtggac
ctacttgcatcactctgtaacatgtatgagacatcagaggacgaactgagaaaaacaatg
gtaaaatcaaatactgtagtggcagatattttaaagaaacaaccttgtttggcatcagaa
agtcaaaatgggaacttggacaacatcgacacagatggcttgacttattttgaaggttta
ttggaggaatcttctctgtcttccagtttaagtatccttgaaaaggattacaatgatgca
atattccaggatggtgaattagatgaaaaattgttcattaatgatgatgaaagtttgctt
ggatcaagcagcttgtctggtggtgcagtaaatatgagtggtaccaagagaaaactggat
ttgatgtcctccccgacaaagacaatgacaagtccactttccccttttcggtctccttcg
aagataatgactagccctgttagtacagccatgacaactgcaaaatggctacgaacaata
gtttctccacttccatcaacaccgtctatagaattggaacgtttcttgtcatcctgtgac
aaggatgtgacatttgatgtcattaagagggcccgcattattttggaggcaatctttccc
agtagtggccttggtgaccgaaatataatctcaaacatgcaaagtaccaactcaatggat
aatgcttgggctgaacaacgtagattggaagcattaaagttgtactatagagttttacaa
gctatgtgtacagctgaatcccaaatactccatggtaacaatctaacctcgttgttaaca
aacgagaggtttcacaggtgtatgcttgcatgttcggcagaactagttcttgctacccat
aagacggttactatgttgtttccagctgttttggaaagaacaggaattactgcttttgat
cttagtaaggtaattgaaagtttcatcagacacgaagaatctcttccaagggaactgagg
cgacatttgaactccctagaagaacgccttttggaaagcatggtatgggagaaaggttcc
tcgatgtacaactcactgactgtagcaagaccagcactttcttcagaaattaaccgtctc
gggctgttagcggaacccatgccatctctggatgcaattgcactgcaaactaacgtgtct
tgtggagggttgccacctgttccttcactgcagaaacgtgacttatcaccaggcaagaat
aacgaccttcgatcaccgaaaagagtttgcactgaatatagaagtgtattggtagaacgg
aattctttcacgtcaccagtaaaggatcgtcttttgggaataaataattcgaagtcaaag
ctattatcacctgctttgcagtctgcatttgctagtcccacaagaccaaatccagctggc
agaggggaaacatgtgcagagactgctgttaatctgttttttagcaagattatcaagtta
ggtgctgtaagaatcaatgggatggttgaaaggttgcagttgtctcaacaaataagagaa
cgagtatactgtcttttccagcaaattttgagtcaacggactgctctattttttaatcgc
catattgaccaaatcatcctctgttgtttctatggagttgcaaagatttcccaattgagc
ttaacctttaaagaaatcatcttcaactacagaaagcaaccacattgtaaacctcaagtt
tttcgtgcggtgtttgttaatgacaggtcgtcttctctgcgccatgggcagaaaacagcg
caggatcatgttgatatcattgtgttttataatgaaatattcataccagctgtgaagccg
ttgttagtggatcttgctccagcaaccattgccaaagccactaaccaggtttccgaagct
aagaatagagatgaagctccatgccctggctcacccaaggtatccacattccccagtctt
cctgatatgtctccaaagaaggtatctgcagtgcacaatgtatatgtctctccgttgcgg
tcaacaaagatggatgctttaatttctcatggatctaaaagttattatgcatgtgtcgga
gaaagcacccatgcttaccagagcccatcgaaagacctgactgccattaacaatcgattg
aatgtcaatcggaaagtcagaggtacgcttaattttgacgaggcggatgtcgtggtgagt
gactctttggttgctaacagtctatatctacaaaatgggaatggtccatccacatcaagt
ggacagctgaaaactgaatga
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