Erigeron canadensis (horseweed): 122578322
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Entry
122578322 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 36
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122578322
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122578322
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Helicases
122578322
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
122578322
NCBI-ProteinID:
XP_043606194
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All DBs
Position
8:complement(288991..293136)
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AA seq
497 aa
AA seq
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MTDQEDLIDENFPLFSRKPRHESSESASTVADNPSSYHHQFVKDTSSSNPNTSNKTFSDL
GLSDWALQTCKELGMKKPTPVQQNCIPHILAGDDVLGLAQTGSGKTAAFALPILHRLAKD
PFGVFCLVVTPTRELAYQLAEQFKALGSCLNLKCAVIVGGMDMITQSQALMRRPHVVIAT
PGRLKVLIEQSPDVPAVFSNTKFLVLDEADRVLDVGFEAELRVVFKCLPKNRQTLLFSAT
MTSNLQALLDVSMNKAYFYAAYEGLQTVDTLKQQYVFVPETVKDVYLYHILSRRMEDMGI
RSAIIFVSRCRDCHRLGLLMEVLGLEVAALHSYKSQSLRLSALHKFKSGKVPVLLATDVA
SRGLDIPTVDLVINYNIPRDPRDYVHRVGRTARAGRGGLALSLVIQKEVDLIKEVEKDLG
KELEKFECKEDDVLEDIKKVFDARHVAKMKMSDDGFEETEKARKAQKMKGLAEKGFMNKN
KSKKRKREKFTMKQLVE
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccaagaagaccttatcgacgaaaacttccccttattttctcgcaaaccaaga
catgaatcctctgagtctgcctccacagttgctgataatcctagctcctaccatcatcag
tttgtcaaagacacatcatcatcaaatcctaacaccagtaataaaacattttctgatcta
ggtctttcagattgggctctgcaaacttgcaaagaattaggcatgaaaaagcctacaccc
gttcaacaaaattgcatcccacatatccttgccggggacgacgtgttaggcttggcacaa
accggaagtggtaaaacagccgctttcgcattgccgattctccatcgccttgccaaggat
cctttcggtgttttttgtttggtggtgactcctactcgtgaacttgcgtaccaattggct
gaacagttcaaggcacttggatcgtgtttgaatttaaaatgtgctgttatagttggtggg
atggatatgatcacgcagtcgcaagcattgatgagacgtcctcatgttgttattgccact
cctggtagacttaaagttcttattgaacagagtccagatgttcctgctgttttttccaac
accaagttcttagtgttggatgaggctgatagagttctagatgttggctttgaagcagag
ttgagagtggtattcaagtgcttacccaaaaacagacagactttgttattttctgcaaca
atgacaagcaaccttcaagctttacttgacgtttctatgaacaaggcatatttttatgct
gcatatgaagggttgcaaacagttgacactcttaaacaacagtatgtgtttgtcccagaa
actgtcaaggatgtttatctgtatcacattttatcacggcgtatggaagatatggggatt
cgatctgccataatttttgtttccagatgcagggattgtcatcgtttgggtttgttgatg
gaagtgcttggtctggaagtagctgctttgcattcatacaaatcgcaatctttaaggttg
tctgcacttcacaaatttaaatccgggaaggttcctgtattacttgctactgatgttgcc
agtcggggtttggatattccgacagttgatcttgtgattaactataatataccaagagat
ccaagggactatgttcatcgtgttggacgtacagctagagctggcagaggaggactagca
ttaagtttagtcattcaaaaagaagttgatcttattaaggaggtagaaaaagatcttggg
aaagaattggagaagtttgaatgtaaagaggatgatgtacttgaagatattaaaaaggtt
tttgatgcgagacatgtggcaaaaatgaaaatgtcggatgatgggtttgaagagacggag
aaagcaaggaaagcacagaagatgaaaggcttggctgaaaaaggatttatgaacaagaac
aagagcaagaaacgaaaaagagagaaatttactatgaagcagttggtagagtag
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