Erigeron canadensis (horseweed): 122578347
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Entry
122578347 CDS
T07610
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122578347
09122 Translation
03013 Nucleocytoplasmic transport
122578347
03015 mRNA surveillance pathway
122578347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122578347
03041 Spliceosome [BR:
ecad03041
]
122578347
03009 Ribosome biogenesis [BR:
ecad03009
]
122578347
03012 Translation factors [BR:
ecad03012
]
122578347
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122578347
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122578347
mRNA cycle factors
Stress granule specific factors
122578347
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122578347
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Helicases
122578347
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
eIF-4
122578347
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
122578347
NCBI-ProteinID:
XP_043606227
LinkDB
All DBs
Position
8:43195981..43200426
Genome browser
AA seq
408 aa
AA seq
DB search
MAGTSVVPANRGRRNTMVDDEKLVFETSRGVEPIMSFDQMGIKDDLLRGIYQHGFEKPSA
IQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELASQTE
KQILAIGDFISIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPELQVCLVSATLPNEILEMTSKFMTDPVRILVKR
DELTLEGIKQFFVAVERENWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREHNFT
VSAMHGDMPQKERDAIMEEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaacgtcagtggttccggcaaacaggggacggcggaacacgatggtggacgac
gagaagctggtgtttgaaacatcacgaggggtagaaccaatcatgagtttcgatcagatg
ggaatcaaagacgatctgcttcgtgggatttatcaacatgggtttgaaaaaccatctgca
attcaacagcgagctgttaggcctattattgagggccgtgacgtcattgctcaggctcaa
tctggtactggcaaaacatccatgattgctcttactgtctgccagattgttgatacttct
tccagagaggttcaagctttgattttgtcacctacaagagagcttgcatctcagacagag
aaacagatactggctattggtgattttattagcatccaagcccatgcctgcattggtgga
aaaagtgtcggggaggacataagaaagttagaaaatggagttcatgttgtttccggaaca
cctggcagagtatgtgacatgattaagagaaggacattgcgaactagagccatcaaatta
ctaattcttgatgaatctgacgaaatgttgagcagaggttttaaggatcagatatatgat
gtctatcgataccttccaccagagctccaggtctgtttggtgtctgctaccctccctaat
gaaatattggagatgaccagcaaatttatgactgatcctgttcgcatccttgtaaaacgt
gatgaattgactcttgagggaataaaacaattctttgttgcggtagaaagagagaattgg
aagtttgatactctctgtgatctttatgatactcttacaattacccaggcagtaattttc
tgcaacaccaagcgaaaggtcgattggttgaccgagaagatgcgtgagcacaactttact
gtatcagcaatgcatggagatatgcctcagaaggagcgggatgcaattatggaagagttc
cgatctggtacaacccgtgttctgatcaccacagatgtctgggccagaggattggatgtt
caacaggtttccttggtgataaattatgacctccctaataaccgtgaactttatattcat
cgtattggtcgatctggtcgttttggacgaaagggtgttgcaataaatttcgtgaaaact
gatgatattaagattctaagagacatagagcagtactacagtacccagattgatgaaatg
cctatgaatgtggcagatttgatataa
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