Erigeron canadensis (horseweed): 122578422
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Entry
122578422 CDS
T07610
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122578422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122578422
03036 Chromosome and associated proteins [BR:
ecad03036
]
122578422
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122578422
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122578422
PBAF complex
122578422
GBAF(ncBAF) complex
122578422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SANT_DAMP1_like
ZZ
Motif
Other DBs
NCBI-GeneID:
122578422
NCBI-ProteinID:
XP_043606316
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Position
8:28866798..28873686
Genome browser
AA seq
769 aa
AA seq
DB search
MPASSSETRNRWRKRKRGGGSGGEQSRKPRPKPTRRVEDDDEDYEQEEDEDVELDQQQNE
FDNDSPDPVAGAFTGAGGGGVVVAGAGGGEKEVEADAAVRVSMFPNVVKQKVNQVHESVV
RVVERERACRSGDSSSVGVGGMLLENVSYGQMQAVSALPKDAPVLTGGEEGSYVITPPPI
MEGRGVVKRYWSNRVHVVPMHADWFSPTTVNRLERQAVPHFFSGKSMEHTPEKYMDCRNR
IVAKYMENPAKRLSVSDCHEFLVGVDADDVTRVVRFLENWGVINYCAAPPTVHEPRNEGS
CLTEDAKGELRVPATALRSIDSLIQFDRPSCRLKASDIYPELAVDSEEKSDLDSRIREVL
SENRCNHCSKSLGIAYYQSLKEMETVLCLNCFGEGAFVAGHSSLDFIKVDSSKYYGDLEA
DSWTNQETLLLLEALELFNENWTEIAEHVGTKSKAQCILHFVRLSIDEIPLEKIEVPAAS
NMPNGNGCGKPQSYANGKASIIEDLEIEDKLPFEKSGNPVMSQVAFLASAVGPRVAAACA
HASLAALSENDHQGASENADGSVSENRMNSENMNGRDVRNPIQPKDENSGGNATPISFEK
MRNAVRVGLSAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVESLLIKEC
EQLERGRQRVSTERGLMLSSQFGATRPTGLPGVGSSMVNNSPGPSRPPGSNQQPFISGFP
SNQPMHPQMTQQSMFGLGPRLPLSAINPSSSSASHPMLRPVSGSRSGFE
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgccagcctcttcttcagaaacacgaaacaggtggcgaaaacgtaagcgcggcggcgga
agcggaggcgaacaatcacgaaaacctagaccgaaaccgacgcgtcgtgtcgaagacgac
gatgaggattacgaacaagaagaagacgaagatgttgaattggatcaacaacagaatgaa
ttcgataacgattcgccggatccggtcgccggagcattcaccggagctggtggtggtggt
gttgtggttgccggagctggtggtggagagaaggaggttgaggcggatgcggcggtgcgg
gtttcgatgtttccaaatgtggtgaagcagaaggtgaaccaggttcacgagtcggtggtt
cgggttgtggagagggagagagcgtgtaggagcggcgatagtagtagtgtcggtgttgga
gggatgttgttggagaatgtttcgtatgggcagatgcaggcggtttctgctttgcctaag
gatgcgccggttttgactggtggagaggaagggtcttatgtgattacaccgcctccgatt
atggaaggacgtggcgtcgttaagagatattggtcgaatcgtgttcatgttgtaccaatg
cacgcagattggttttcaccaacgacggtaaacaggttagagagacaagctgtgccacat
tttttctcggggaagtcaatggagcatactccagaaaagtatatggattgtcgtaaccga
attgttgctaaatacatggaaaatccagcaaagaggttgtctgtttctgactgtcatgaa
tttttagttggggttgatgctgatgatgtaactcgggttgtacgttttcttgaaaattgg
ggtgtcattaattattgtgctgctccaccgactgttcatgaacctagaaatgagggctca
tgtctgacggaggatgcaaaaggagagttacgtgtgccagcaactgctttgcgatctatt
gatagcttaatccaatttgataggcctagttgtaggctaaaagcatcagatatatatcca
gaattggccgttgatagtgaagaaaagtctgatttggacagcagaatacgagaggtatta
tccgaaaaccggtgtaatcactgctctaaatctcttggcattgcgtactatcagtctctc
aaagagatggagacagttttatgcttgaattgcttcggcgagggggcatttgttgctggt
cattcaagtttggattttataaaagtggattctagcaagtattatggagatcttgaagca
gacagctggaccaaccaagagacgttattgttgctggaagctttggaactttttaatgag
aattggactgagattgctgagcacgttggcacaaagtcaaaagctcaatgtattctccat
tttgtacgcctctcaatagacgagattcctctggaaaaaattgaagttccggctgcttca
aacatgcccaatggtaatggatgtggaaagccacaatcatatgcaaatgggaaagcctct
attattgaagaccttgaaatcgaagataaattgccgtttgaaaaatctggaaatccagta
atgtctcaagttgcctttttggcatctgcagtaggccccagagtggctgctgcctgtgca
catgcatctttagctgcattatctgagaatgatcatcaaggtgcttctgaaaatgcagat
gggtctgtttctgagaataggatgaattcagaaaacatgaatggtagagatgttagaaac
ccaattcaaccaaaagacgagaactctggagggaatgctactcctatatcttttgaaaag
atgagaaatgcagtaagagtgggtctctctgcagccgcaacgaaagcaaagctttttgca
gatcatgaagagagagaaattcaaaggctttctgctaatataatcaatcatcagttgaag
aggttagagctgaagctgaaacaatttgcggaagtagaaagcttattaataaaggagtgt
gaacaactagaaaggggaagacaaagggtatcaaccgagcggggcctcatgctttcctcc
caatttggtgcaactaggcccacaggcttgccaggtgttggttcttcaatggtcaacaac
agccctggacccagcaggccgccgggatcaaatcaacagccgttcatttcgggatttccc
agtaaccaacccatgcacccacagatgacccagcaatccatgtttgggcttggtcctagg
cttcctctttcggctatcaacccttcatcttcatcagcctcacaccccatgttgagaccc
gtgtcaggaagtagatcaggttttgaataa
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