Erigeron canadensis (horseweed): 122578824
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Entry
122578824 CDS
T07610
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03030
DNA replication
ecad03420
Nucleotide excision repair
ecad03430
Mismatch repair
ecad03440
Homologous recombination
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122578824
03420 Nucleotide excision repair
122578824
03430 Mismatch repair
122578824
03440 Homologous recombination
122578824
03460 Fanconi anemia pathway
122578824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122578824
03032 DNA replication proteins [BR:
ecad03032
]
122578824
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122578824
Transcription factors [BR:
ecad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122578824
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122578824
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122578824
MMR (mismatch excision repair)
122578824
DSBR (double strand breaks repair)
HR (homologous recombination)
122578824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
RMI1_C
zf-like
Motif
Other DBs
NCBI-GeneID:
122578824
NCBI-ProteinID:
XP_043606805
LinkDB
All DBs
Position
8:complement(24752683..24757244)
Genome browser
AA seq
628 aa
AA seq
DB search
MPPVRLSSNGVPAIIAGDLNSKPLLQLFDIALITSQQKERYQCLVSDSVVCKQAVLASQL
NDLVKNGVVRNGSVVQLLEYMCTNAQNRKVIVILNMEIIIPECEKIGNPKMYAESETVAH
NPVSNGISQEAAIPPANRLNATAVNNNIQTCRPTVQPAYQPPPVYKSHGAIMKNEAPARI
IPIAALNPYQGRWAVKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVD
RFYDTIEVGKVYMISKGSLKPAKKNFNHLNNEWEIFLEASSTIDLCPDEDASIPQQQFSF
RPISEIETAENNSILDVIGVVIAVKPSVPILRKNGMETQRRTINLKDQSGRSVELTLWGE
FCNREGQTLQGMVDSGYFPVLAVKAAKVSDFSGKSIGTVSSTQLFIDPDSFEAKNLRSWF
DREGRDINSQSITRDFSSGPKNEMRKTISQIKDEGLGRSDKPDWITVKATVTFIKTDNFC
YTACPLMIGDNKQCNKKVTKSGNSKWQCDRCNQEFEECDYRYILQCQVQDHTGMTTVTAF
QETGEEILGCPAKELYMMKYEAHDDDRFASVIKGRLFAEVLLKLKIKEELYGEEQKVKIT
VMKVDKVNYSSDTKFLLDLIPKSNQLPR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctgtgaggctgagttcaaacggagttccggcaataatagccggagacctaaat
tcaaaaccgttactacagctattcgacatcgctctgataacctctcaacaaaaggaaagg
tatcagtgtctcgtctccgattccgtcgtgtgtaaacaagccgttctcgcttctcagctt
aacgatcttgtcaaaaacggcgtcgttcgtaacggatccgtcgttcagctcctcgaatac
atgtgcactaacgctcaaaatcgcaaggttatagttatactgaatatggaaatcattatc
cctgaatgtgaaaaaattgggaacccaaagatgtatgctgaatccgaaacagtggctcac
aatccagtttctaatgggatttctcaggaggcagcaataccccctgctaatcgtttgaat
gccacagctgtgaataataacattcaaacttgccgaccaactgttcaacctgcataccaa
ccacctccagtgtacaaaagccatggggcaatcatgaaaaacgaggcaccagcacgtatt
atcccaattgctgctcttaacccataccaaggtagatgggctgttaaggcaagagttact
gcaaaaggagatcttcgtcgctacaacaatgcaaagggagatggaaaagtcttctcattt
gaccttcttgattcggatggaggggaaatacgtgtgacctgttttaatgctgttgttgac
cgcttctatgataccattgaggttgggaaagtttacatgatatcgaaaggcagtttaaaa
ccagccaagaaaaacttcaatcatctgaataacgaatgggagattttcctggaggcgtct
tccacaatagatctttgccccgatgaagatgcttcgataccacaacagcaattttctttc
agacctatcagtgagattgagactgctgagaataattcaatcctagatgtcattggtgtt
gtaatagcagtcaagccttctgtgcctattttaaggaagaacggaatggaaacccaaaga
aggactataaacctaaaggatcaatctggtagaagtgtagagcttacactttggggtgag
ttttgcaatagggaaggtcaaacacttcaaggaatggttgattctggttattttcctgtc
ttagctgtgaaagctgcaaaagttagtgacttcagtggaaaatccattggaactgtttca
tccactcaacttttcatagatccagattcattcgaggccaaaaatcttagatcatggttc
gatagagagggtagagacattaattctcagtccatcacccgagatttttcaagcggcccg
aaaaatgagatgcgtaaaaccatctctcagatcaaggatgaagggcttgggagatcagat
aaacccgactggatcactgttaaagcgactgtaacttttatcaaaacggataacttttgt
tacactgcctgcccattgatgattggagataataaacagtgcaacaagaaagtaacaaag
tcagggaactcaaaatggcaatgtgaccgctgtaaccaagaatttgaggaatgtgattat
agatatattcttcaatgtcaagtccaagatcacactggaatgacaacagtgactgctttt
caagaaaccggagaagaaatcttgggctgccctgcaaaagaactctacatgatgaaatac
gaagctcatgatgatgaccgttttgcaagtgtaatcaaaggccgtctatttgcagaggta
ctactgaagctgaaaatcaaagaagagttatatggcgaagaacaaaaggttaaaataact
gtcatgaaggttgataaggttaattactcttctgacaccaaatttctgttggatttaatc
ccaaagtctaaccagcttccaaggtaa
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