Erigeron canadensis (horseweed): 122578869
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Entry
122578869 CDS
T07610
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122578869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122578869
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122578869
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
122578869
Messenger RNA biogenesis [BR:
ecad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
122578869
Transfer RNA biogenesis [BR:
ecad03016
]
Prokaryotic type
tRNA degradation factors
122578869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
Motif
Other DBs
NCBI-GeneID:
122578869
NCBI-ProteinID:
XP_043606852
LinkDB
All DBs
Position
8:36987209..36996549
Genome browser
AA seq
986 aa
AA seq
DB search
MASVAITRKNHLISFLIHRCRRTTTNSRHSFSTSTTGTKILETFREEFEIGSRVISLETG
KIARFANGAVVLGIDDTNVLSTVCSAKGDGLRDFLPLTVDYQEKQFAQGVIPGTYMRREG
APKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDVMAANATSAALMLSD
IPWGGPIGMIRVGRINGHLVVNPTMDELNMSDLNLVYACTRDKTLMLDVQAHEISERDLE
AAFRFAHPEAVKFIEPQLRLAAKVGKQKKDYKLSLISERTMDKIRNLAEAPIEAIFTDPS
YGKFERGEALDKIAQDVKCVLEEEGDEESLKAVSKTVDTVRKQVIRKRIITEGFRLDGRR
LDEVRPVYCEAGNLPGLHGSALFSRGDTQVLCTVTLGAPGDAQRLDSIVGPPTKRFMLHY
SFPPYCINEVGKRTGLNRREVGHGTLAEKALLAVLPPELDFPYTVRINSEVMGSDGSTSM
ATVCGGSMALMDAGIPLQDHVAGLSVGLVTEVDSSTGTINEYRILTDILGLEDHLGDMDF
KIAGTRNGITAIQLDIKPAGIPLDIICESLGPAYKGRLQILEHMEQEINAARAQDGRNSP
RLVTLKYSNDDLRRLIGPLGALKMKIEEETGARMSVSDGTLTILAKNQSVMEKVQEKVDL
IIGRAIEVGGVYKGIVTAIKEYGAFVEFNGGQQGLLHISELSHEPVSKISDVVSVGQQLS
LMCKEQDNRGNIKLSLKATLPQKSKNVFVAETSSSTSKQMPNSFKPGGKTPNQQDQNNAV
NNLLEDEDNSTKSKSSYSSTSPIVIRSAVECDEEEKSAGLGSSLKDNSKAQQSIKSKSAQ
KPKTIKALSKELELASVSSKKDRNSKPFLLTEKRNNTYTSSEEEEKDGDKRPTETLAHFL
NHLGDQESKVEGPIDAKKLKLGTKVTATIIQVRTRGLVLDLGGGINGMYRFESGGKREFE
VGDEVRVQCTSFTSKGIPVMSIIQDA
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtggcgataaccagaaaaaaccacttaatatcttttctgatccaccgttgc
cgtcgtacaaccaccaacagccgccacagtttctctacttcaactaccggaaccaaaatc
ctcgaaacatttagagaagaattcgaaatcggatcacgcgtcatctcgttagaaacaggg
aagattgctcggttcgcaaatggcgcagttgtgttagggattgatgatactaatgtgctt
tcaactgtttgttctgctaaaggcgacggtcttcgtgatttcttacctctcactgttgat
tatcaagagaaacagtttgctcaaggagtaattccaggtacatatatgagaagggagggt
gctcctaaagaacgagagcttttatgtgggcgtctcattgatcgacctatacgccccctt
tttccggctgggttttaccatgaggtccaggtgatggctagtgtgctttcttcagatggg
aaacaggatccggatgtaatggctgctaacgccacttctgctgctcttatgctatcggat
ataccatggggtggtcctatcggaatgatacgtgtagggaggatcaacgggcatcttgtt
gtaaatccaaccatggacgagcttaatatgagcgatctcaaccttgtttatgcctgcaca
agagataagaccttgatgttagatgtccaagcacatgagatttctgaaagagaccttgaa
gctgcatttaggtttgctcaccccgaggcagttaagttcattgagccacaactgagactc
gctgcaaaagtggggaaacagaaaaaggattataaactgtccttaatttctgaaagaaca
atggacaagatccgtaacttggctgaagctcctatcgaagcaatcttcacagatccttcc
tatggaaagtttgaacgtggggaagccttagataaaattgcacaagatgtgaaatgtgta
ctagaggaagaaggtgatgaagaaagcttaaaagctgtatcaaagacggttgatactgtg
agaaagcaggtaatacgcaaaaggatcattactgaagggtttaggcttgacggaagacgt
cttgatgaggttagacccgtgtattgtgaagctggtaacttgcctggattgcatggatca
gcccttttttcacgtggagatacccaggttctttgtactgttactcttggggcacctggg
gatgctcaacgtttggattctattgtgggtcctccaaccaagcgatttatgcttcattat
agttttccaccttactgtataaatgaagttggaaagcgcactggcttgaaccgccgtgaa
gttggacatggtacccttgccgagaaagctcttcttgctgtattgcctcctgaacttgac
tttccatacaccgtccgtattaattcagaagtcatggggtctgatggttcgacatcgatg
gcaactgtctgtggagggagtatggctctaatggatgctggcatccctttacaagatcat
gttgcaggtttgtcagttggtctcgttactgaagttgactcatcaactggcactatcaat
gagtaccgcatattaactgatattttgggtctcgaagatcatcttggggacatggatttt
aaaatagcaggaacacgaaatggaattacagcaattcagttggacataaagcctgctgga
atccctcttgatatcatttgtgagtcactgggacctgcatacaaaggccgactccaaata
cttgaacatatggagcaagaaataaatgcagcacgtgctcaagatggaagaaattctcct
cgattagttactttaaaatacagcaatgatgatctacgccgcttgattggaccacttggt
gccttaaagatgaaaatcgaagaagagacaggtgctcgtatgtctgttagtgacggaaca
cttactatacttgctaaaaatcaatctgtaatggaaaaagtgcaggaaaaggttgatcta
ataattgggcgagcaattgaagtaggaggtgtttacaaaggcatcgtaactgcaataaaa
gagtatggggcttttgtagagttcaatggtggccaacaaggcctcttacacatttccgaa
ttgtcacatgaaccggtatccaaaatttcagatgtagtttcagttgggcaacaactttct
ttaatgtgtaaggagcaggataaccgtggtaacataaaactctctctaaaagccacttta
cctcaaaagagcaaaaacgtttttgtggctgaaacttcttcgagcacatcaaaacaaatg
cccaatagtttcaaacctggtggaaagacaccaaatcaacaagatcagaataatgcggtt
aacaatttacttgaagacgaagataacagtactaagtcaaaatcatcttattcctcaaca
tcacctattgtgattcgcagtgctgtggagtgtgacgaggaggaaaagtcagcaggttta
ggctcaagtttgaaagataacagcaaagcccaacagtctataaaatcaaaatctgctcaa
aagcccaaaaccataaaagcattaagcaaagagcttgagttagcctccgtttcatctaaa
aaagacagaaatagcaaaccttttctgctcactgaaaagagaaataatacttatacaagc
tccgaagaagaagaaaaagatggggataaacgtccaactgaaaccttagcacattttcta
aaccatttaggagatcaagaatccaaagttgagggtccaattgatgcaaaaaagctcaaa
cttggaaccaaagtaactgcaacgatcattcaagtacgtacgcgtggattagtactagac
ttgggtggtggaatcaatgggatgtaccggtttgagagtggtggcaaaagggagtttgaa
gttggcgatgaggtccgcgtacaatgtacaagttttaccagcaaaggcatacctgtaatg
tctattattcaggatgcttag
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