Erigeron canadensis (horseweed): 122579291
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Entry
122579291 CDS
T07610
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122579291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122579291
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122579291
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
ADSL_C
DUF2465
Motif
Other DBs
NCBI-GeneID:
122579291
NCBI-ProteinID:
XP_043607368
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All DBs
Position
8:31601045..31607821
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AA seq
936 aa
AA seq
DB search
MDVDLQDHNKIPDLKLDAKQAQGFLTFFKRLPNDVKAVRLFDRRDYFTAHGENASFIAKT
YYNTTTVLRQISNGSDALSSVSVNKNMFETIVRDLLLERTDHSLELYEGSGSNWRLVKKG
TPGNLGSFEDILFANNDMHDSPVIVALVPNFRDTGCTVGLGYVDLAKRVLGIAEFLDDTH
FTNVESALVALGCKECLLPMEITKSSECKPLYDVMSRCGVMVTERKKAEFKGRDLAQDLG
RLVKGSSEPVRDLVSAFEYAPGALGVLLSYAELLSDENNYGNYTISQYNLNSCMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGRRLLHMWLKQPLLDVTEINERLDLVQAF
VDDAAFRQDLRQHLKRICDIERLMRNIEKRRASLMHIVKLYQSSIRMPYIKTAMERYDGQ
FAPLVKEKYMDRLNCLTNDDHLNKFIGLVEISVDLDQLENGEYMISPGYDSQLSALKNEQ
ELLEQQIHDLHKETAEDLDLSVEKTLKLDKGTQFGHVFRITKKEEPKIRKKLNSQFIVLE
TRKDGVKFTNTKLKKLGDQYQKILEEYKSCQKELVARVVSTAATFSEVFEGLATLLSELD
VLLSFADLAASSPTPYTRPEITSSDAGDIILEGCRHPCVEAQDWVNFIPNNVKLVREKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVVKAPTLFATH
FHELTALAHENAGQSSGIANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFP
ESVVSLAREKAAELEDFSPVSIVSNQAEQEAGSKRKKPSEADDMVLGVPRARKFLEDFCE
LPIAKMDFKQALQEVKRLKNDLQNDASNCKWLQQFL
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatttgcaggatcataacaaaattcctgacctcaaattagatgctaaacaa
gctcaaggatttctaaccttcttcaaaagattgcctaatgatgtgaaggcggttcggtta
ttcgatcgacgggattatttcaccgctcatggggaaaatgcgtcttttattgcaaaaact
tattacaataccacaacagtcttaagacaaattagcaatgggtctgatgctttgtctagt
gttagtgtcaacaaaaatatgtttgagacgattgtccgtgatctgctattggagagaact
gatcatagccttgagctgtatgagggctctggctcaaactggagattagtaaaaaaggga
acccctggtaatcttggcagctttgaagacattttattcgccaataatgacatgcatgac
tcaccagtgatagttgctctagttccaaacttccgtgatacagggtgcactgttggtttg
ggctatgttgatcttgccaaaagggtgctaggaattgctgagtttcttgatgatacccac
tttacaaacgttgaatctgctctagtcgcacttggctgcaaagaatgtcttttgcctatg
gaaatcaccaaatcaagtgagtgtaaacctttgtatgatgtaatgtcaagatgcggtgtg
atggtaaccgaaagaaagaaagcagagtttaaaggacgagacttagcacaagatctaggt
agactggtcaaaggttctagtgaacctgttcgtgacctagtttcggcatttgaatatgcc
cctggagctttaggggtattattgtcttatgctgagttactttctgatgaaaataattat
ggaaattatactatcagtcaatataatcttaacagttgcatgagattagactctgctgct
atgagggcattgaatgttatggagagtaagacggacgcaaacaaaaacttcagtctattt
ggtcttatgaatagaacttgtacagctggaatgggtagaaggttgctacacatgtggcta
aagcaacctttgttggatgtaacagagataaatgaacggctagatctagtgcaagctttt
gtggacgatgccgccttccgtcaggatttgaggcagcatttgaagcggatatgtgatatt
gagcgactaatgcgcaatattgaaaagcgaagagctagtttgatgcatatagtcaagctg
tatcagtcaagcatcagaatgccatatattaaaactgccatggaacggtacgacggtcaa
tttgcaccgttagttaaggaaaagtacatggatcgtttaaattgtctgaccaatgatgat
cacctgaataagtttattggtcttgtggaaatttctgttgaccttgaccaacttgagaat
ggcgaatacatgatttcacctggttatgattcccagttgtcagccctaaaaaatgagcaa
gagttacttgaacagcaaatacacgatttgcataaagagactgcggaggatcttgatctg
tcagttgaaaagactctaaagttagataaaggtacacaatttggacatgtttttagaatc
acaaagaaagaagaaccaaaaatacggaagaagctcaatagccaatttattgttcttgaa
actcgaaaagatggtgtcaaatttacaaatactaagcttaagaaattgggagaccaatat
cagaagatattagaggaatataagagctgtcaaaaggagctggtagccagagttgtttca
actgctgctactttctctgaggtgtttgagggcctggctacgcttctctcggaacttgat
gttttgcttagctttgctgatctggcagctagcagcccaaccccttatactagaccagaa
atcacatcatcggatgcaggagatattatattagaaggctgtagacacccatgtgtggaa
gctcaagactgggtgaattttataccaaacaatgtcaaacttgttagggaaaaaagctgg
tttcaaattatcacaggacctaacatgggaggaaaatctacatttatacgtcaggttggt
gtgaacattcttatggcacaagtgggttcttttgttccttgtgacaaagctagcatttct
gttcgtgactgtatatttgctcgtgtgggtgctggtgattgccagttacgtggagtttct
acctttatgcaagaaatgcttgagacagcttcaattttgaaaggtgccactgataagtca
ctgataattattgatgagttgggtcgtggaacatcgacttatgatggatttggtttagct
tgggccatttgtgaacacttggttgaagtggttaaagcacctaccttgtttgctactcac
tttcatgagttgactgcattagctcatgaaaatgccggtcaatcgtctggtatagcaaat
tatcacgttagtgcacacattgactcctcgagccgaaaactaacaatgctctacaaggtt
gaaccaggggcttgtgatcagagttttggcattcatgttgcagagtttgccaactttcct
gaaagtgttgtttctcttgctcgagaaaaagcggccgagttagaggatttctcacctgtt
tcaattgtatctaaccaagctgaacaggaggctggtagtaaacgaaagaaaccatctgaa
gcagatgacatggttttaggagttcctcgtgctcgtaagtttttggaggacttctgtgag
ttgccaattgcaaaaatggacttcaagcaggcattgcaagaagtgaaaaggctaaagaat
gatttgcagaatgatgccagcaactgtaaatggcttcaacaattcctttag
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