KEGG   Erigeron canadensis (horseweed): 122579327
Entry
122579327         CDS       T07610                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03020  RNA polymerase
ecad03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122579327
  09124 Replication and repair
   03420 Nucleotide excision repair
    122579327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecad03021]
    122579327
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122579327
Transcription machinery [BR:ecad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     122579327
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122579327
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Ogr_Delta Cas12f1-like_TNB Zn_ribbon_recom Zn_ribbon_4 Zn_ribbon_RPAB4
Other DBs
NCBI-GeneID: 122579327
NCBI-ProteinID: XP_043607416
LinkDB
Position
8:complement(23958129..23961993)
AA seq 114 aa
MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
DVAADPTLPRTKSVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtaccatgaagttttgtcgtgaatgcaataacattttgtatccaaaagaagataaa
gatcagaagatccttctttatgcttgcagaaactgtgatcatcaggaggttgcagataac
aactgtgtatacagaaacgaaatacaccatgctgttggggagcgaactcaagttttgcag
gatgtggctgcggatcccactcttccgcgtaccaaatcagttcggtgcgctcaatgtggt
catggagaggctgttttcttccaggcaactgctagaggggaagaaggtatgacattgttc
tttgtttgctgcaacccaaactgtggccatcgatggagggattaa

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