KEGG   Erigeron canadensis (horseweed): 122579385
Entry
122579385         CDS       T07610                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ecad  Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ecad04812]
    122579385
Cytoskeleton proteins [BR:ecad04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     122579385
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Katanin_con80 Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_EIPR1 eIF2A Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_WDR19_1st VPS8_N Beta-prop_ACSF4 WDR54
Other DBs
NCBI-GeneID: 122579385
NCBI-ProteinID: XP_043607487
LinkDB
Position
8:complement(42901237..42909273)
AA seq 790 aa
MASTKRAYKLQEFVAHESSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNPILSLSGHS
SGIDSVSFDSSEDMVAAGAASGTIKLWDLDEAKIVRTLTGHRSNCISLDFHPFGEFFASG
SLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNSVKLWDLTAGKLLH
DFKFHEGQVQCIEFHPNEFLMATGSADKTVKFWDLETLELIGSAGPETSGVRCMQFNPDG
RTLLCGLNESLKVFSWEPIRTHDAVDVGWSKLLDLNMHEGKLLACSYNQSCVGVWVVDIS
ITEPNKVSKINGRQEQMPNSSGNASVLTENTPKTSSGRLSISQSSDPIVKETKSLGRLSV
TQNSELTNKDSKTFSSTGNVPQKMYPNIVQKISPTGSISSPSAPAVLKRSGAKSQSTQNV
SSTFSRLDVAPVIVPRNNVDSRREGLPGRVTPTMVMSKPPDSRKLSNIKDEAEKPPSSVQ
SVTDASDIDSSRVADGISFNSLKDSAFGKTAKGTGFEDDRCVVSGKPEPNVVTESLPSNQ
IEIYEGRLPRPVRDTYSMESKRRGRTRTLVSTWDRKERSSYHESLSSRNLPDSVSAVNML
PSSVKQLSEPTKETQPVTEEDALAEIMGRHDQFVSSMQSRLAKLQMIHRCWDRNDIKGAI
RAMERMADHAVTADIVSLLTGKIDSITLDICSCLLPLLTSLLDSDMDRHRGVSLELLLKL
VRIFGSVIYSSLQASSSVGVDIEAEQRLERCNLCYLELEKVKHSLALLTRRGGSIAKSAH
ELNLALQEVS
NT seq 2373 nt   +upstreamnt  +downstreamnt
atggcttctacaaaacgtgcttataagctacaggaattcgtagctcatgaatcaagtgta
aattgtttaaagattgggaggaagtcttcgagagtacttgttactggtggagaagatcat
aaggttaatctatgggctatcggaaaaccgaatcctatcctgagcttgtctggccattca
agtggaattgattcagtaagctttgattcttctgaagacatggtagctgctggagctgca
agtggtactattaagttgtgggatttagacgaggcaaaaattgttcgcactcttactggt
catcgatccaattgcatatctttggactttcatccgtttggggagttttttgcttctggg
tccctggacacgaatttaaagatatgggatattaggcgaaaagggtgtatacatacatat
aagggtcacacacggggggtcaatgcaataagatttacacctgatggtcgttgggtggta
tctggtggagaggacaacagtgtgaagctatgggatttaacagccggaaagctattacat
gatttcaagtttcatgaaggccaggtccaatgtatagaatttcatccaaatgagttcttg
atggccacaggttctgctgataaaactgttaaattttgggaccttgagaccttggaactt
ataggttctgctggtccagagactagtggagttcgttgtatgcaattcaatcctgatggg
agaacccttctatgtggtctgaatgaaagtctgaaggtgttttcatgggaaccaatcaga
actcatgatgctgtggatgtgggatggtcaaagttgttagatcttaatatgcatgaaggg
aagcttctcgcctgttcttacaatcaaagctgtgtaggagtttgggttgtagatatatcg
ataactgaaccaaataaggtttccaagattaatggtcgtcaagaacaaatgcccaactca
agtggaaacgcttcagttcttactgagaataccccaaaaaccagttcaggcaggctatcc
atttcacaaagttcagatccaattgtgaaggaaacaaaatcattgggtaggctttcagtt
actcaaaattcagagctgaccaacaaggattctaaaaccttttcatccacaggaaatgtc
cctcaaaagatgtatccaaatattgtccaaaagatcagcccaacgggttcaatttcgtct
ccaagtgccccggcagttttaaagcgaagtggtgcaaagagccagtcaacacaaaatgta
tcatcaacttttagtagattagatgttgcacctgtaattgtgcctagaaacaatgttgat
tcaagaagagaaggtcttcctggaagagtgacaccaacaatggtaatgtcaaaacctcca
gattctcgaaagctctcaaatataaaggatgaagcagaaaagccaccatcttctgtgcag
tctgtgactgatgcaagtgacattgattcaagtcgagttgctgatggaattagtttcaat
tcactgaaagactcggcttttggaaaaactgcgaaggggacaggctttgaagatgacaga
tgcgtggtttctggaaagccagaaccgaatgtagtgacagagtcacttccaagcaaccag
attgaaatttatgaaggacgtctgccccgaccagttagagatacttactctatggaaagt
aaaagaagaggaagaacgcgtacacttgtttctacttgggacaggaaagaaaggtcttct
tatcatgagagtctctcttccagaaatctccctgatagcgtctctgccgtcaacatgcta
ccaagttctgtgaaacaattatctgaacctactaaggaaactcagcctgttacagaggaa
gatgctcttgcagagataatgggacgacacgatcagtttgtatcttcaatgcagtctcgt
ctagcaaagctacagatgattcatagatgctgggataggaatgatattaaaggagcaatt
agagcaatggagagaatggctgatcatgctgtaactgcagatatagtgagccttttgaca
ggaaaaatagactccatcaccctggatatttgctcttgtctgctgcctcttctcaccagt
ctccttgatagtgacatggataggcatcgaggagtatcgttagaattgttgcttaagctg
gtgcggatatttggttctgtgatttattcgtctttacaagcgtcatcctctgttggtgtt
gacatcgaggcagaacaaaggctggaacgttgcaacctctgctatctagagcttgaaaag
gtcaagcattccttggcactcctaaccagaaggggcggatcgattgccaagtcagcgcat
gagttgaatcttgcacttcaagaagtctcatga

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