Erigeron canadensis (horseweed): 122579684
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Entry
122579684 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32-like
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122579684
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122579684
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Helicases
122579684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Motif
Other DBs
NCBI-GeneID:
122579684
NCBI-ProteinID:
XP_043607842
LinkDB
All DBs
Position
8:complement(36107361..36112972)
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AA seq
736 aa
AA seq
DB search
MKKPKSKLQNRRKSEVEEIEFLSKWIEHGKPDSGSNPLSLLPLPAKSPVGRIDDENSTSY
SRYAGCTKFQQLPISKNLKDGLRQSGYKNMTRIQRASLPHSLCGRDILPSAKTGSGKTLA
FIIPVLEKLYKERWGVEDGVGSIIMSPTRELAYQLFGVLKSVGKHHGFSAGLLIGGNEYD
VEKDRVNHMNILICTPGRLLEHMNSIPNFDCSQLQILVLDEADRILGADFKKEVNAIISQ
LPKHRQTLLFSATQTKSVKHLARLSLKDPEYIAVDEDAIAATPTRLQQKVMLVSLDQKLD
MLWSFIKGHPHLRILVFLATCKQVRFVYEAFKKLLPGVPLNYLHGRMKQIQRTFILQQFV
DRRSVLFSTDVASRGLDFNKGVDWVVQVDCPDDVAGYIHRVGRTARYDSVGRSVLFLLPS
EMKMLERLQEKKIPIQLAEANKNRLQSISGLLGGLLVKETGLQPLAQKAFKTYVKSIYKK
NDKEVFDVTKLPIEDYSASLGLPMTPRLHYLDRKNPERGLTESNSVSEIPVRKELIRQKS
SNNLLEESEDDETLDLLHRKETPDGEEGNAIAVDDMPSTRVLKKKKLKINVHRQFGNRVV
FDEEGNTLPPVAALADTRADSALLDRDKVCKRFADLREDMKKRDKEDKQLDHQRRKEKRT
KEKNKHKRARDEEDEDEENDDFSKSDKDSKNVKRNKVYFDSDSDNENKEKVTLKTDAISL
ADQEELALKLLSSMQS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacccaaatccaaactccaaaacagaagaaaatcagaagttgaagaaattgaa
ttcctttcaaaatggatcgaacatggaaaacccgactctggttccaacccattgtctctt
ctccctttgcctgcgaagtctccggttgggcgtatcgatgatgaaaacagtactagttat
tcgcggtatgcaggctgcacaaagttccaacaacttcctatttcaaagaacttgaaagat
gggttaagacaatctgggtataaaaacatgactcgtattcaaagagcttctttgcctcac
tccctttgtggccgcgatatactcccttctgctaaaacaggctccggaaaaactcttgct
tttatcattcctgtgttggagaaattatacaaagaaagatggggtgtagaggatggagta
ggtagcattatcatgtctccaacaagggagttggcataccagctttttggtgtattaaaa
tcagttggaaagcaccatggatttagtgcaggcctcttaattggtggtaacgagtatgat
gtagagaaagatcgcgtgaatcacatgaatatattgatctgtactcctggtcgccttctc
gagcacatgaactcaattccaaatttcgattgttcccaactacagattttggtacttgat
gaagcagatcgaattcttggtgctgattttaagaaagaagtcaatgctataatttcacaa
cttccaaaacacagacaaactctattgttctctgcaacacaaacaaagtcagttaaacat
cttgcacgactcagtctgaaggaccctgaatatattgctgttgatgaggacgctattgct
gcaactcccacacgtcttcagcagaaggtcatgcttgtctcccttgatcaaaagctagac
atgttatggagcttcattaagggacatccacatttaagaattctagttttccttgccacc
tgcaagcaggtgaggtttgtgtatgaagcattcaagaaacttctccctggggtccctttg
aattatctgcatggaaggatgaaacaaatacaacggacgttcatactacagcagtttgtt
gatcgccgatcagttctcttctcaactgacgtggcttcaagaggtctcgatttcaacaaa
ggggttgattgggttgttcaggtggattgccctgatgacgttgcaggttacatacataga
gttggccgaactgcccgttatgattccgtagggcggtcagttttatttctcttgccttcc
gaaatgaaaatgcttgagagactgcaggagaaaaagatacctattcagttggcagaggca
aataaaaaccggctgcaatcaatttctggtttattaggtggtcttctagtcaaggaaacg
ggtctacaaccattggctcagaaggcctttaaaacatatgtgaaatcgatttacaaaaag
aatgataaagaagtttttgatgtgacaaagcttcccattgaagattattcagcatccttg
ggtttgccaatgactccaagactacattaccttgaccgtaagaatccagaaagggggctc
acagaatccaattcagtatctgaaatacctgtgagaaaagagttgattagacaaaagtca
agtaacaacttacttgaggaatctgaagatgatgagacacttgatttacttcatagaaag
gaaactcctgatggcgaagaagggaatgcaatagcagttgacgatatgccttcaacaaga
gttcttaagaaaaagaagctgaagatcaatgtccatagacaattcgggaatcgagttgta
tttgatgaagaagggaacaccctgccaccggttgcagcactagcagacacaagggcagac
tctgctctacttgatagagataaagtatgtaagaggtttgcagacttgagagaagatatg
aagaaacgtgacaaagaggataagcaactggaccatcaaagacgtaaagagaagagaaca
aaggagaagaataaacataaaagagcaagagatgaagaagatgaggatgaagagaatgat
gacttttctaagtcagataaagactccaagaatgtcaaaagaaacaaggtgtattttgat
agcgatagtgataatgagaataaagaaaaggtgacattgaagactgatgcaatctcttta
gcagatcaagaggagcttgccctcaagttattgagctcaatgcaatcttga
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