Erigeron canadensis (horseweed): 122579807
Help
Entry
122579807 CDS
T07610
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122579807
09124 Replication and repair
03420 Nucleotide excision repair
122579807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122579807
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122579807
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122579807
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122579807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
F-actin_cap_A
GRAM
DUF3072
Motif
Other DBs
NCBI-GeneID:
122579807
NCBI-ProteinID:
XP_043607978
LinkDB
All DBs
Position
8:complement(241770..248273)
Genome browser
AA seq
599 aa
AA seq
DB search
MTDDDRMMTTQMLVKRAKFKSSVKDPGVPGILTLTRERLVFTPNDPSLNLPVDVPFKLIK
GHKSSKEAPNRPALLNLTSQHQASYFFEFNTYPDRELCRDFVAKAITFSAETGAPPENVV
NEQLSSAEMERRIKLLQDDTELQKLHKQFVIGGVLSETEFWATRKKLLDVNPGRKAKQRL
GLKSDMTFNTKPSSDGQSNRVTFSLTPEMIHQIFAEKPAVRQAYLNFVPHKLNEKEFWTK
YWKAQYIHSTKNIVAAAAEAAEDEYLAVFLKQDAILASESRQKIRKVDPTLDMEADEGDD
YTHIPGHGLASESSKDELEAQYEPYKRSFLQDINRHAAVVLEGRTVDVGTVDTRSVAEAL
ASLKHVELAKEASDGSVHQDRLDRITRMTEIEDLQAPHDPPVAPLCIKDPRDYFDSQQVN
SLNQFAGTRQLKSRLSTSEAYCSLRNFISDTREVGLSDPIVRPEVAVKVFKILTDDISRS
KYQLGKTSHDSILDTFPSVTKEELLLHWTSIQELLKHFWSSYPITTSYLYTKVSRLKDAM
AQIYTKLQEIKESVQSDSRHQVSLLVQPMLQALDAAFAHYELDQQKRSSKSGDKPNGYV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgatgatcggatgatgacgacgcagatgttagtgaaacgggccaagtttaaa
tcttctgtcaaagaccccggcgttcctggcattctcacattgacgagggagaggcttgtt
tttacgcctaatgatccatcattaaatcttcctgttgatgttccttttaagcttattaaa
ggacacaaatctagcaaggaggctcccaatcgacctgctctacttaatcttacgagccaa
catcaggccagttactttttcgagttcaacacttaccccgacagggaactttgccgcgac
tttgtagccaaagctatcacattctctgccgaaactggagcaccccctgaaaacgttgtc
aatgaacaacttagttcagctgaaatggaacgtcgaattaaactactgcaagacgacacc
gagctgcagaagcttcataagcagtttgtcatcggcggtgtgttgtcagagactgagttt
tgggcgactagaaagaagttgctagatgtgaatcctggcagaaaagcaaagcaacgtttg
gggttgaaaagtgatatgactttcaataccaaaccctcatctgatggtcagtcgaacaga
gttacatttagcttaacgcctgaaatgatacaccagatatttgctgaaaaaccagcagta
cggcaggcatatctaaactttgtgcctcacaagttgaatgagaaggaattttggactaaa
tactggaaagcacaatatatccacagtaccaaaaatattgttgctgctgctgcagaggcc
gctgaagatgagtatctagcagtttttctaaagcaagatgccattttggctagtgaaagt
cgccagaagattaggaaggtagatccgactttggacatggaagccgacgaaggggatgat
tatactcatattccgggtcatggcctagccagcgaaagtagcaaggatgaacttgaagca
cagtatgagccttacaaaagatctttcctgcaagatattaataggcatgctgcagttgtt
cttgaaggaagaactgtagatgtcgggacagttgatacaagatctgttgctgaagcactt
gctagtttaaaacatgttgagctagctaaagaagcttcagatggcagtgtacatcaagat
cggctagatagaataactagaatgactgagattgaggacttacaggcaccacatgaccct
ccagttgcaccactttgtataaaggatcctcgggattactttgactctcaacaagttaat
tccctaaatcagtttgctggaacaagacagctgaaatctaggcttagcacctctgaagct
tattgttctctaaggaactttatctctgatactagagaagtaggtttgagtgatcccata
gtcaggcctgaagtggctgtcaaggttttcaagatattgacagatgatatatcaagatcc
aaatatcagcttggtaaaacctcacatgatagcatattggatacgtttcccagtgtcacg
aaggaggagcttttgcttcattggacgtccattcaggaattattaaagcatttctggtcc
tcgtatccaattacaacttcatatctttatacgaaggtgagccggctgaaggatgccatg
gcacaaatctacacgaaactacaggagattaaagaatccgtgcaatcagattcaaggcac
caagtttcgcttcttgttcaaccaatgcttcaggctctagatgctgcctttgcacattac
gaattagaccagcagaagagatcttctaagagtggtgacaaaccgaatggatatgtttaa
DBGET
integrated database retrieval system
